30169.m006527 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30169.m006527 T48780_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
30169.m006527 RRM 20 78
30169.m006527 RRM 124 181
30169.m006527 RRM 249 311

Links

Other RRM family RBPs
Other Ricinus communis RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.793
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.783
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.922
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.767
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.714
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.719
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.755
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.784
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.766
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.967
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.794
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.972
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.972
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.787
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.972
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.797
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.803
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.967
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.972
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.778
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.950
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.972
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.787
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.793
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.780
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.804
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.961
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.803
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.784
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.761
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.790
MDP0000236223 Malus x domestica MDP0000236223 N 0.844
MDP0000269393 Malus x domestica MDP0000269393 I 0.928
MDP0000274672 Malus x domestica MDP0000274672 N 0.811
MDP0000796160 Malus x domestica MDP0000796160 I 0.772
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.950
mgf001230m Mimulus guttatus mgf001230m I 0.863
mgf005649m Mimulus guttatus mgf005649m I 0.901
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.824
PK14390.1 Cannabis sativa PK14390.1 I 0.783
ppa004961m Prunus persica ppa004961m I 0.788
ppa005791m Prunus persica ppa005791m I 0.967
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.774
SB01G034060 Sorghum bicolor Sb01g034060 I 0.741
SB03G028150 Sorghum bicolor Sb03g028150 I 0.791
SB07G021250 Sorghum bicolor Sb07g021250 I 0.780
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.939
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.789