estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 (Nectria haematococca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 T50444_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 RRM 51 121

Links

Other RRM family RBPs
Other Nectria haematococca RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.859
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.930
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.944
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.746
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.746
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.704
An12g03930 Aspergillus niger CADANGAG00009835 N 0.930
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.718
ATEG_09693 Aspergillus terreus CADATEAG00004149 N 0.718
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.732
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.915
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.930
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.704
Bm1_02935 Brugia malayi Bm1_02935 N 0.704
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.704
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.789
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.875
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.930
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.930
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.704
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.704
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.930
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.789
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.718
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.704
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.718
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.704
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.704
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.704
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.704
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.740
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.701
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.930
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.958
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.972
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.958
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.701
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.958
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.714
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.944
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.775
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.944
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.761
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.732
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.944
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.930
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.803
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.958
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.875
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.972
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.789
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.958
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.704
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.901
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.704
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.732
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.732
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.746
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.701
gw1.233.10.1 Emiliania huxleyi gw1.233.10.1 N 0.704
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.817
gw1.34.29.1 Emiliania huxleyi gw1.34.29.1 N 0.704
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.727
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.930
KLTH0H05214g Kluyveromyces thermotolerans KLTH0H05214g N 0.704
LOAG_03270 Loa loa LOAG_03270 N 0.718
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.704
MCYG_04468 Microsporum canis MCYG_04468 N 0.930
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.944
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.930
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.746
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.746
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.704
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.704
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.704
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.704
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.704
NCBP2 Homo sapiens ENSG00000114503 N 0.704
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.704
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.789
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.704
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.704
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.718
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.704
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.704
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.704
NCBP2 Equus caballus ENSECAG00000016153 N 0.704
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.704
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.704
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.718
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.746
NCU00210 Neurospora crassa NCU00210 N 0.958
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.944
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.930
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.958
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.944
PGTG_01720 Puccinia graminis PGTG_01720 N 0.761
PHUM535920 Pediculus humanus PHUM535920 N 0.761
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.704
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.944
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.747
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.747
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.930
SB04G025800 Sorghum bicolor Sb04g025800 N 0.704
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.817
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.930
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.803
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.817
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.845
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.915
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.930
TERG_03424 Trichophyton rubrum TERG_03424 N 0.930
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.915
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.930
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.930
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.718
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.704
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.704