mgf005649m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf005649m T53625_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
mgf005649m RRM 20 78
mgf005649m RRM 123 182
mgf005649m RRM 248 310

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.746
30169.m006527 Ricinus communis 30169.m006527 I 0.901
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.751
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.874
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.735
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.725
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.733
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.741
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.885
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.751
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.896
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.896
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.762
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.896
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.782
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.766
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.907
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.912
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.741
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.896
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.912
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.735
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.746
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.749
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.751
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.907
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.766
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.738
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.725
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.754
MDP0000236223 Malus x domestica MDP0000236223 N 0.775
MDP0000269393 Malus x domestica MDP0000269393 I 0.857
MDP0000274672 Malus x domestica MDP0000274672 N 0.742
MDP0000796160 Malus x domestica MDP0000796160 I 0.725
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.907
mgf001230m Mimulus guttatus mgf001230m I 0.896
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.793
PK14390.1 Cannabis sativa PK14390.1 I 0.741
ppa004961m Prunus persica ppa004961m I 0.741
ppa005791m Prunus persica ppa005791m I 0.901
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.743
SB01G034060 Sorghum bicolor Sb01g034060 I 0.746
SB03G028150 Sorghum bicolor Sb03g028150 I 0.750
SB07G021250 Sorghum bicolor Sb07g021250 I 0.749
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.879
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.749