MDP0000269393 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000269393 T57536_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000269393 RRM 335 393
MDP0000269393 RRM 443 496
MDP0000269393 RRM 564 626

Links

Other RRM family RBPs
Other Malus x domestica RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.755
30169.m006527 Ricinus communis 30169.m006527 I 0.928
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.741
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.894
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.725
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.725
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.723
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.746
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.734
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.906
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.762
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.911
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.911
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.761
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.928
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.770
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.766
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.928
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.933
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.746
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.911
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.933
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.750
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.761
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.753
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.762
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.928
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.766
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.746
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.729
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.763
MDP0000236223 Malus x domestica MDP0000236223 N 0.861
MDP0000274672 Malus x domestica MDP0000274672 N 0.869
MDP0000796160 Malus x domestica MDP0000796160 I 0.730
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.923
mgf001230m Mimulus guttatus mgf001230m I 0.825
mgf005649m Mimulus guttatus mgf005649m I 0.857
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.782
PK14390.1 Cannabis sativa PK14390.1 I 0.741
ppa004961m Prunus persica ppa004961m I 0.751
ppa005791m Prunus persica ppa005791m I 0.956
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.742
SB01G034060 Sorghum bicolor Sb01g034060 I 0.709
SB03G028150 Sorghum bicolor Sb03g028150 I 0.765
SB07G021250 Sorghum bicolor Sb07g021250 I 0.753
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.894
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.751