YBX1 (Tursiops truncatus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSTTRG00000001353 T17057_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.746
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.746
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.708
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.708
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000001273 CSD 57 120

Links

Other CSD family RBPs
Other Tursiops truncatus RBPs

183 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.746
AAEL001375 Aedes aegypti AAEL001375 I 0.000
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.704
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.788
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.000
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.761
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.761
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.732
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.873
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.873
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.845
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.845
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.817
Bm1_57515 Brugia malayi Bm1_57515 I 0.000
CBN16711 Caenorhabditis brenneri CBN16711 I 0.000
CBG02981 Caenorhabditis briggsae CBG02981 I 0.000
cey-1 Caenorhabditis elegans F33A8.3 I 0.000
CJA05984 Caenorhabditis japonica CJA05984 I 0.000
CRE01789 Caenorhabditis remanei CRE01789 I 0.000
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.873
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.789
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.718
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.761
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.718
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.831
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.803
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.000
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.789
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.845
ENSCJAG00000009207 Callithrix jacchus ENSCJAG00000009207 I 0.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.775
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.873
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.732
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.845
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.831
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.873
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.767
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.746
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.873
YBX2 Canis familiaris ENSCAFG00000016128 I 0.845
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.718
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.873
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.718
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.000
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.000
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.000
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.704
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.000
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.789
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.718
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.000
CSDA Cavia porcellus ENSCPOG00000011329 I 0.873
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.873
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.845
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.873
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.722
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.736
ybx1 Danio rerio ENSDARG00000004757 I 0.873
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.000
Csda Dipodomys ordii ENSDORG00000009103 I 0.873
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.000
GF10852 Drosophila ananassae FBgn0087892 I 0.732
GH16919 Drosophila grimshawi FBgn0124390 I 0.732
yps Drosophila melanogaster FBgn0022959 I 0.718
GI13673 Drosophila mojavensis FBgn0136428 I 0.732
GL15684 Drosophila persimilis FBgn0153288 I 0.732
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.732
GM24682 Drosophila sechellia FBgn0179545 I 0.718
GD12750 Drosophila simulans FBgn0184477 I 0.718
GJ14010 Drosophila virilis FBgn0201228 I 0.732
GK16710 Drosophila willistoni FBgn0218712 I 0.732
GE20150 Drosophila yakuba FBgn0237472 I 0.718
YBX1 Echinops telfairi ENSETEG00000014789 I 0.000
YBX2 Echinops telfairi ENSETEG00000014271 I 0.000
CSDA Echinops telfairi ENSETEG00000002557 I 0.873
LOC100072964 Equus caballus ENSECAG00000009996 I 0.845
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.859
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.873
LOC100065107 Equus caballus ENSECAG00000013777 I 0.873
LOC100067336 Equus caballus ENSECAG00000023592 I 0.873
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.873
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.831
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.873
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.873
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.873
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.764
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.873
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.831
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.785
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.845
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.873
133388 Helobdella robusta 133388 I 0.000
146547 Helobdella robusta 146547 I 0.000
YBX2 Homo sapiens ENSG00000006047 D 0.831
CSDA Homo sapiens ENSG00000060138 I 0.873
YB-1 Homo sapiens ENSG00000065978 D 0.873
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.761
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.761
ISCW005281 Ixodes scapularis ISCW005281 I 0.732
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.873
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.845
CSDA Loxodonta africana ENSLAFG00000017247 I 0.873
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.873
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.859
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.845
CSDA Macaca mulatta ENSMMUG00000022469 I 0.873
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.873
CSDA Microcebus murinus ENSMICG00000004602 I 0.732
YBX1 Microcebus murinus ENSMICG00000014984 I 0.873
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.817
CSDA Monodelphis domestica ENSMODG00000018248 I 0.859
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.873
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.831
Ybx1 Mus musculus ENSMUSG00000028639 I 0.873
Ybx2 Mus musculus ENSMUSG00000018554 I 0.845
Csda Mus musculus ENSMUSG00000030189 I 0.873
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.775
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.803
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.845
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.873
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.704
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.845
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.718
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.718
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.873
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.873
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.800
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.000
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.812
YBX2 Oryzias latipes ENSORLG00000018683 I 0.000
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.873
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.718
CSDA Pan troglodytes ENSPTRG00000004681 I 0.873
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.873
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.831
PHUM156710 Pediculus humanus PHUM156710 I 0.746
PHUM156720 Pediculus humanus PHUM156720 I 0.732
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.704
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.873
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.704
YBX2 Procavia capensis ENSPCAG00000008019 I 0.845
CSDA Procavia capensis ENSPCAG00000001397 I 0.803
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.873
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.873
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.845
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.859
Csda Rattus norvegicus ENSRNOG00000005480 I 0.873
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.704
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.817
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.000
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.845
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.739
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.789
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.873
YBX2 Sorex araneus ENSSARG00000000488 I 0.831
YBX1 Sorex araneus ENSSARG00000012628 I 0.704
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.873
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.732
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.732
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.817
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.743
CSDA Sus scrofa ENSSSCG00000000633 I 0.873
YBX2 Sus scrofa ENSSSCG00000017938 I 0.845
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.761
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.873
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.873
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.764
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.873
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.704
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.873
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.750
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.761
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.000
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.873
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.845
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.000
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.797
CSDA Vicugna pacos ENSVPAG00000000876 I 0.732
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.873
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.000
AAI55915 Xenopus laevis AAI55915 I 0.845
AAI69704 Xenopus laevis AAI69704 I 0.845
ybx2-a Xenopus laevis AAI69706 D 0.845
CAA42778 Xenopus laevis CAA42778 I 0.873
P21573 Xenopus laevis P21573 I 0.873
P21574 Xenopus laevis P21574 I 0.845
P45441 Xenopus laevis P45441 I 0.831
AAI55914 Xenopus laevis AAI55914 I 0.831
AAI30161 Xenopus laevis AAI30161 I 0.873
AAI06324 Xenopus laevis AAI06324 I 0.873
AAH42217 Xenopus laevis AAH42217 I 0.873
AAH41191 Xenopus laevis AAH41191 I 0.873
AAA49924 Xenopus laevis AAA49924 I 0.831
AAA49716 Xenopus laevis AAA49716 I 0.845
AAA49715 Xenopus laevis AAA49715 I 0.873
Q00436 Xenopus laevis Q00436 I 0.873
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.873
csda Xenopus tropicalis ENSXETG00000016239 I 0.831