CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK12245.1
(
Cannabis sativa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
PK12245.1
T23980_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK12245.1
PUF
662
696
DIIGHIVEFSSDQHGSRFIQQKLENCSVEEKASVF
PK12245.1
PUF
698
732
EVLPHASKLMTDVFGNYVIQKFFEYGSHDQRKELA
PK12245.1
PUF
734
768
QLRGQILPLSLQMYGCRVIQKALEVIDLEQKAQLV
PK12245.1
PUF
770
804
ELDGHVMRCVRDQNGNHVIQKCIESIPTEKIAFII
PK12245.1
PUF
806
841
AFRGQVATLSMHPYGCRVIQRVLEHCTDELQCQFIV
PK12245.1
PUF
843
877
EILESVCTLAQDQYGNYVTQHVLERGKANERSLII
PK12245.1
PUF
879
913
KLSGHVVQLSQHKFASNVIEKCLEHGGPADRELLI
PK12245.1
PUF
921
952
EGNDNLLTMMKDQYANYVVQKTLEICTDSQRI
Links
Other
PUF
family RBPs
Other
Cannabis sativa
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002888502.1
Arabidopsis lyrata
fgenesh2_kg.2__907__AT1G66810.1
N
0.000
XM_002887123.1
Arabidopsis lyrata
fgenesh2_kg.2__1068__AT1G68200.1
N
0.000
AT1G66810
Arabidopsis thaliana
AT1G66810-TAIR-G
N
0.000
AT1G68200
Arabidopsis thaliana
AT1G68200-TAIR-G
N
0.000
BRADI2G15670
Brachypodium distachyon
BRADI2G15670
N
0.000
BRADI2G45090
Brachypodium distachyon
BRADI2G45090
N
0.000
PK08294.1
Cannabis sativa
PK08294.1
N
0.000
PK28804.1
Cannabis sativa
PK28804.1
N
0.000
Cucsa.087930
Cucumis sativus
Cucsa.087930
N
0.000
Cucsa.280660
Cucumis sativus
Cucsa.280660
N
0.000
Glyma20g25710.1
Glycine max
Glyma20g25710.1
N
0.000
Glyma10g41530.1
Glycine max
Glyma10g41530.1
N
0.000
chr5.CM0328.460.nd
Lotus japonicus
chr5.CM0328.460.nd
N
0.000
MDP0000941410
Malus x domestica
MDP0000941410
N
0.000
MDP0000251967
Malus x domestica
MDP0000251967
N
0.000
MDP0000217945
Malus x domestica
MDP0000217945
N
0.000
MDP0000313949
Malus x domestica
MDP0000313949
N
0.000
MDP0000311868
Malus x domestica
MDP0000311868
N
0.000
cassava10040.m1
Manihot esculenta
cassava10040.m1
N
0.000
cassava40081.m1
Manihot esculenta
cassava40081.m1
N
0.000
cassava2640.m1
Manihot esculenta
cassava2640.m1
N
0.000
AC235678_14
Medicago truncatula
AC235678_14
N
0.000
Medtr5g097070
Medicago truncatula
Medtr5g097070
N
0.000
mgf026476m
Mimulus guttatus
mgf026476m
N
0.000
mgf020324m
Mimulus guttatus
mgf020324m
N
0.000
mgf021134m
Mimulus guttatus
mgf021134m
N
0.000
BGIOSIBCE020132
Oryza indica
BGIOSIBCE020132
N
0.000
BGIOSIBCE002955
Oryza indica
BGIOSIBCE002955
N
0.000
LOC_Os01g45730
Oryza sativa
LOC_Os01g45730
N
0.000
LOC_Os05g50080
Oryza sativa
LOC_Os05g50080
N
0.000
B9HWC0_POPTR
Populus trichocarpa
POPTR_0010s12860
N
0.000
B9PD44_POPTR
Populus trichocarpa
POPTR_0004s09410
N
0.000
B9NK61_POPTR
Populus trichocarpa
POPTR_0005s15100
N
0.000
ppa018479m
Prunus persica
ppa018479m
N
0.000
29586.m000617
Ricinus communis
29586.m000617
N
0.000
29660.m000770
Ricinus communis
29660.m000770
N
0.000
SB09G029330
Sorghum bicolor
Sb09g029330
N
0.000
GSVIVG00030969001
Vitis vinifera
GSVIVG00030969001
N
0.000
GSVIVG00011819001
Vitis vinifera
GSVIVG00011819001
N
0.000
GRMZM2G157927
Zea mays
GRMZM2G157927
N
0.000
GRMZM2G116416
Zea mays
GRMZM2G116416
N
0.000
GRMZM2G149347
Zea mays
GRMZM2G149347
N
0.000