PK12245.1 (Cannabis sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PK12245.1 T23980_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK12245.1 PUF 662 696
PK12245.1 PUF 698 732
PK12245.1 PUF 734 768
PK12245.1 PUF 770 804
PK12245.1 PUF 806 841
PK12245.1 PUF 843 877
PK12245.1 PUF 879 913
PK12245.1 PUF 921 952

Links

Other PUF family RBPs
Other Cannabis sativa RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002888502.1 Arabidopsis lyrata fgenesh2_kg.2__907__AT1G66810.1 N 0.000
XM_002887123.1 Arabidopsis lyrata fgenesh2_kg.2__1068__AT1G68200.1 N 0.000
AT1G66810 Arabidopsis thaliana AT1G66810-TAIR-G N 0.000
AT1G68200 Arabidopsis thaliana AT1G68200-TAIR-G N 0.000
BRADI2G15670 Brachypodium distachyon BRADI2G15670 N 0.000
BRADI2G45090 Brachypodium distachyon BRADI2G45090 N 0.000
PK08294.1 Cannabis sativa PK08294.1 N 0.000
PK28804.1 Cannabis sativa PK28804.1 N 0.000
Cucsa.087930 Cucumis sativus Cucsa.087930 N 0.000
Cucsa.280660 Cucumis sativus Cucsa.280660 N 0.000
Glyma20g25710.1 Glycine max Glyma20g25710.1 N 0.000
Glyma10g41530.1 Glycine max Glyma10g41530.1 N 0.000
chr5.CM0328.460.nd Lotus japonicus chr5.CM0328.460.nd N 0.000
MDP0000941410 Malus x domestica MDP0000941410 N 0.000
MDP0000251967 Malus x domestica MDP0000251967 N 0.000
MDP0000217945 Malus x domestica MDP0000217945 N 0.000
MDP0000313949 Malus x domestica MDP0000313949 N 0.000
MDP0000311868 Malus x domestica MDP0000311868 N 0.000
cassava10040.m1 Manihot esculenta cassava10040.m1 N 0.000
cassava40081.m1 Manihot esculenta cassava40081.m1 N 0.000
cassava2640.m1 Manihot esculenta cassava2640.m1 N 0.000
AC235678_14 Medicago truncatula AC235678_14 N 0.000
Medtr5g097070 Medicago truncatula Medtr5g097070 N 0.000
mgf026476m Mimulus guttatus mgf026476m N 0.000
mgf020324m Mimulus guttatus mgf020324m N 0.000
mgf021134m Mimulus guttatus mgf021134m N 0.000
BGIOSIBCE020132 Oryza indica BGIOSIBCE020132 N 0.000
BGIOSIBCE002955 Oryza indica BGIOSIBCE002955 N 0.000
LOC_Os01g45730 Oryza sativa LOC_Os01g45730 N 0.000
LOC_Os05g50080 Oryza sativa LOC_Os05g50080 N 0.000
B9HWC0_POPTR Populus trichocarpa POPTR_0010s12860 N 0.000
B9PD44_POPTR Populus trichocarpa POPTR_0004s09410 N 0.000
B9NK61_POPTR Populus trichocarpa POPTR_0005s15100 N 0.000
ppa018479m Prunus persica ppa018479m N 0.000
29586.m000617 Ricinus communis 29586.m000617 N 0.000
29660.m000770 Ricinus communis 29660.m000770 N 0.000
SB09G029330 Sorghum bicolor Sb09g029330 N 0.000
GSVIVG00030969001 Vitis vinifera GSVIVG00030969001 N 0.000
GSVIVG00011819001 Vitis vinifera GSVIVG00011819001 N 0.000
GRMZM2G157927 Zea mays GRMZM2G157927 N 0.000
GRMZM2G116416 Zea mays GRMZM2G116416 N 0.000
GRMZM2G149347 Zea mays GRMZM2G149347 N 0.000