PK12245.1 (Cannabis sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PK12245.1 T23980_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK12245.1 PUF 662 696
PK12245.1 PUF 698 732
PK12245.1 PUF 734 768
PK12245.1 PUF 770 804
PK12245.1 PUF 806 841
PK12245.1 PUF 843 877
PK12245.1 PUF 879 913
PK12245.1 PUF 921 952

Links

Other PUF family RBPs
Other Cannabis sativa RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.712
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.715
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.719
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.703
PK11972.1 Cannabis sativa PK11972.1 N 0.719
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.770
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.843
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.851
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.836
MDP0000265231 Malus x domestica MDP0000265231 N 0.900
MDP0000277305 Malus x domestica MDP0000277305 N 0.794
MDP0000313902 Malus x domestica MDP0000313902 N 0.759
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.843
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.777
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.801
mgf002285m Mimulus guttatus mgf002285m N 0.786
mgf006786m Mimulus guttatus mgf006786m N 0.777
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.753
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.753
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.702
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.723
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.766
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.826
ppa000898m Prunus persica ppa000898m N 0.890
ppa016404m Prunus persica ppa016404m N 0.798
30169.m006300 Ricinus communis 30169.m006300 N 0.780
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.719
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.702
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.746
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.843
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.773
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.753
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.734