CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMEUG00000016300
(
Macropus eugenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMEUG00000016300
T38294_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
1.000
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.958
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000014905
RRM
372
442
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
Links
Other
RRM
family RBPs
Other
Macropus eugenii
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.000
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.000
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.000
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.000
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.000
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.000
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.000
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.000
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.000
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.000
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.000
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.000
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.000
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.000
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.000