CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_001379460.1
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000015024
T39169_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.774
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.774
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.774
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.749
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.742
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000037814
RRM
13
83
LYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLATMNLDVIKGNPIR
ENSMODP00000037814
RRM
101
169
VFVKNLEKSIDNKALYDTFSTFGRILSCKVISDENGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVF
ENSMODP00000037814
RRM
193
262
IYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIY
ENSMODP00000037814
RRM
296
364
LYIKNLDDTINDEHLRKEFSPFGTITSAKVMMENGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLY
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
85 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.000
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.767
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.739
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.763
PABPC4L
Callithrix jacchus
ENSCJAG00000003241
I
0.000
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.739
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.739
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.763
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.739
pabpc4
Danio rerio
ENSDARG00000059259
I
0.731
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.739
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.742
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.746
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.721
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.739
PABPC4
Homo sapiens
ENSG00000090621
D
0.739
PABPC1
Homo sapiens
ENSG00000070756
D
0.763
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.739
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.763
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.763
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.739
ENSMMUG00000007193
Macaca mulatta
ENSMMUG00000007193
N
0.000
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.710
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.739
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.763
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.743
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.735
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.767
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.731
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.763
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.735
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.767
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.749
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.735
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.763
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.763
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.721
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.739
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.760
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.739
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.763
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.763
Pabpc4l
Rattus norvegicus
ENSRNOG00000029749
N
0.000
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.721
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.739
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.767
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.739
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.763
PABPC5
Sus scrofa
ENSSSCG00000009067
N
0.000
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.767
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.739
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.724
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.724
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.763
AAH73435
Xenopus laevis
AAH73435
I
0.756
pabpc4
Xenopus tropicalis
ENSXETG00000010946
I
0.707