XM_001379460.1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000015024 T39169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.774
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.774
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.774
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.749
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.742
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000037814 RRM 13 83
ENSMODP00000037814 RRM 101 169
ENSMODP00000037814 RRM 193 262
ENSMODP00000037814 RRM 296 364

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.746
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.767
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.739
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.739
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.763
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.742
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.763
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.739
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.739
pabpc1a Danio rerio ENSDARG00000017219 I 0.756
pabpc1b Danio rerio ENSDARG00000021140 I 0.736
pabpc4 Danio rerio ENSDARG00000059259 I 0.731
LOC100054235 Equus caballus ENSECAG00000009396 I 0.739
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.742
PABPC1L Gallus gallus ENSGALG00000004123 I 0.707
PABPC4 Gallus gallus ENSGALG00000003800 I 0.746
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.721
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.728
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.749
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.739
PABPC3 Homo sapiens ENSG00000151846 D 0.735
PABPC4 Homo sapiens ENSG00000090621 D 0.739
PABPC1 Homo sapiens ENSG00000070756 D 0.763
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.763
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.739
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.739
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.763
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.731
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.710
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.739
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.710
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.743
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.728
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.756
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.763
Gm10110 Mus musculus ENSMUSG00000062093 I 0.735
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.714
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.728
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.767
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.731
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.735
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.763
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.767
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.749
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.763
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.735
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.763
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.753
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.717
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.721
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.739
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.739
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.760
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.739
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.763
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.746
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.763
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.714
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.739
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.767
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.721
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.728
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.739
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.763
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.767
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.739
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.753
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.731
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.724
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.703
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.746
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.731
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.724
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.723
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.763
AAI08463 Xenopus laevis AAI08463 I 0.749
AAH73435 Xenopus laevis AAH73435 I 0.756
AAH72110 Xenopus laevis AAH72110 I 0.749
AAH52100 Xenopus laevis AAH52100 I 0.753
AAA60936 Xenopus laevis AAA60936 I 0.749
P20965 Xenopus laevis P20965 I 0.753
Q6IP09 Xenopus laevis Q6IP09 I 0.749
CAA40721 Xenopus laevis CAA40721 I 0.753
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.707
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.770