CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pabpc2
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000051732
T39377_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.910
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.910
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.910
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.853
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.828
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000066639
RRM
13
83
LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVR
ENSMUSP00000066639
RRM
101
169
VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVF
ENSMUSP00000066639
RRM
193
262
VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIY
ENSMUSP00000066639
RRM
296
364
LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLY
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
156 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.989
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.910
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.910
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.910
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.910
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.910
PABPC1
Homo sapiens
ENSG00000070756
D
0.910
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.910
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.910
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.910
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.910
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.910
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.910
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.910
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.910
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.910
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.910
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.910
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.907
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.904
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.889
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.885
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.885
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.882
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.878
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.878
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.875
AAI08463
Xenopus laevis
AAI08463
I
0.875
AAH72110
Xenopus laevis
AAH72110
I
0.875
Q6IP09
Xenopus laevis
Q6IP09
I
0.875
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.871
P20965
Xenopus laevis
P20965
I
0.871
CAA40721
Xenopus laevis
CAA40721
I
0.871
Pabpc3
Rattus norvegicus
ENSRNOG00000017367
I
0.871
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.871
AAH52100
Xenopus laevis
AAH52100
I
0.871
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.867
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.867
AAA60936
Xenopus laevis
AAA60936
I
0.867
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.867
Pabpc6
Mus musculus
ENSMUSG00000046173
I
0.867
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.867
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.864
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.857
PABPC3
Homo sapiens
ENSG00000151846
D
0.853
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.849
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.849
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.839
PABPC1L
Meleagris gallopavo
ENSMGAG00000003674
I
0.839
AAH73435
Xenopus laevis
AAH73435
I
0.835
PABPC1L
Gallus gallus
ENSGALG00000004123
I
0.835
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.835
PABPC3
Tetraodon nigroviridis
ENSTNIG00000013307
I
0.835
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.832
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.832
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.828
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.828
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.828
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.828
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.828
PABPC4
Homo sapiens
ENSG00000090621
D
0.828
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.828
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.828
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.828
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.828
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.828
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.828
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.828
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.828
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.828
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.825
pabpc4
Danio rerio
ENSDARG00000059259
I
0.824
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.821
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.821
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.821
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.821
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.817
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.817
PABPC1L
Anolis carolinensis
ENSACAG00000011841
I
0.814
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.814
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.814
PABPC1L
Takifugu rubripes
ENSTRUG00000011085
I
0.806
XM_001373066.1
Monodelphis domestica
ENSMODG00000013156
I
0.803
PABPC1L
Gasterosteus aculeatus
ENSGACG00000002792
I
0.803
PABPC1L
Taeniopygia guttata
ENSTGUG00000005114
I
0.803
Q6GR16
Xenopus laevis
Q6GR16
I
0.799
AAH71118
Xenopus laevis
AAH71118
I
0.799
LOC100056021
Equus caballus
ENSECAG00000020699
I
0.796
PABPC1L
Monodelphis domestica
ENSMODG00000016198
I
0.796
AAK29408
Xenopus laevis
AAK29408
I
0.796
Q98SP8
Xenopus laevis
Q98SP8
I
0.796
AAH80020
Xenopus laevis
AAH80020
I
0.796
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.792
pabpc1l
Danio rerio
ENSDARG00000002597
I
0.781
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.781
PABPC1L
Oryctolagus cuniculus
ENSOCUG00000003005
I
0.778
PABPC1L
Macropus eugenii
ENSMEUG00000007905
I
0.778
PABPC1L
Sus scrofa
ENSSSCG00000007382
I
0.778
Ame_R005305
Ailuropoda melanoleuca
Ame_R005305
I
0.774
pabpc1l
Xenopus tropicalis
ENSXETG00000022831
I
0.774
pabpc4
Xenopus tropicalis
ENSXETG00000010946
I
0.771
PABPC1L
Bos taurus
ENSBTAG00000016849
I
0.771
PABPC1L
Oryzias latipes
ENSORLG00000010322
I
0.770
PABPC1L
Canis familiaris
ENSCAFG00000009573
I
0.767
PABPC1L
Ochotona princeps
ENSOPRG00000011846
I
0.767
LOC100070836
Equus caballus
ENSECAG00000022681
I
0.763
PABPC1L
Loxodonta africana
ENSLAFG00000003553
I
0.763
PABPC1L
Erinaceus europaeus
ENSEEUG00000005978
I
0.763
Ame_R019277
Ailuropoda melanoleuca
Ame_R019277
I
0.760
PABPC1L
Pteropus vampyrus
ENSPVAG00000012663
I
0.760
PABPC1L
Macaca mulatta
ENSMMUG00000013209
I
0.760
PABPC1L
Tarsius syrichta
ENSTSYG00000006645
I
0.760
PABPC1L
Homo sapiens
ENSG00000101104
I
0.756
PABPC1L
Pan troglodytes
ENSPTRG00000013531
I
0.756
PABPC1L
Gorilla gorilla
ENSGGOG00000004584
I
0.756
PABPC1L
Microcebus murinus
ENSMICG00000000974
I
0.756
ENSPPYG00000011042
Pongo pygmaeus
ENSPPYG00000011042
I
0.756
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.754
PABPC1L
Cavia porcellus
ENSCPOG00000013633
I
0.753
ENSMICG00000009121
Microcebus murinus
ENSMICG00000009121
I
0.749
PABPC1L
Callithrix jacchus
ENSCJAG00000017628
I
0.746
PABPC1L
Tursiops truncatus
ENSTTRG00000007618
I
0.746
PABPC4
Procavia capensis
ENSPCAG00000003341
I
0.746
ISCW014211
Ixodes scapularis
ISCW014211
I
0.739
PABPC1L
Tetraodon nigroviridis
ENSTNIG00000017903
I
0.739
AAEL010318
Aedes aegypti
AAEL010318
I
0.739
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.739
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.739
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.739
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.731
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.731
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.731
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.731
Pabpc1l
Mus musculus
ENSMUSG00000054582
I
0.731
PHUM617090
Pediculus humanus
PHUM617090
I
0.728
Pabpc1l
Rattus norvegicus
ENSRNOG00000012750
I
0.728
AGAP011092
Anopheles gambiae
AGAP011092
I
0.724
ENSMODG00000012040
Monodelphis domestica
ENSMODG00000012040
I
0.724
ENSMLUG00000012245
Myotis lucifugus
ENSMLUG00000012245
I
0.724
gw.1.65.1
Branchiostoma floridae
gw.1.65.1
I
0.721
e_gw.313.40.1
Branchiostoma floridae
e_gw.313.40.1
I
0.721
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.717
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.717
ENSCING00000002796
Ciona intestinalis
ENSCING00000002796
I
0.717
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.717
XM_001379460.1
Monodelphis domestica
ENSMODG00000015024
I
0.714
e_gw1.115.135.1
Lottia gigantea
e_gw1.115.135.1
I
0.714
ENSCSAVG00000004246
Ciona savignyi
ENSCSAVG00000004246
I
0.714
PABPC4
Spermophilus tridecemlineatus
ENSSTOG00000010416
I
0.706
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.703
185682
Helobdella robusta
185682
I
0.703
GH21052
Drosophila grimshawi
FBgn0128514
I
0.701
GI18654
Drosophila mojavensis
FBgn0141393
I
0.701
fgenesh1_pm.scaffold_278000002
Nematostella vectensis
fgenesh1_pm.scaffold_278000002
I
0.701
BDE_estExt_fgenesh1_pg.C_380037
Daphnia pulex
BDE_estExt_fgenesh1_pg.C_380037
I
0.701
GK19652
Drosophila willistoni
FBgn0221650
I
0.701