XM_001373066.1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000013156 T39152_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.844
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.844
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.844
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.798
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000027586 RRM 11 81
ENSMODP00000027586 RRM 99 167
ENSMODP00000027586 RRM 191 260
ENSMODP00000027586 RRM 294 362

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.864
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.864
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.864
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.864
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.864
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.860
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.860
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.860
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.860
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.860
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.860
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.860
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.860
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.860
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.860
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.860
PABPC1 Homo sapiens ENSG00000070756 D 0.860
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.857
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.857
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.842
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.839
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.839
pabpc1a Danio rerio ENSDARG00000017219 I 0.832
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.832
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.828
pabpc1b Danio rerio ENSDARG00000021140 I 0.825
CAA40721 Xenopus laevis CAA40721 I 0.824
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.824
AAH72110 Xenopus laevis AAH72110 I 0.824
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.824
AAH52100 Xenopus laevis AAH52100 I 0.824
Q6IP09 Xenopus laevis Q6IP09 I 0.824
AAI08463 Xenopus laevis AAI08463 I 0.824
P20965 Xenopus laevis P20965 I 0.824
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.821
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.821
AAA60936 Xenopus laevis AAA60936 I 0.821
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.821
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.817
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.814
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.814
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.814
PABPC3 Homo sapiens ENSG00000151846 D 0.810
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.810
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.810
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.810
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.803
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.799
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.799
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.796
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.796
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.796
AAH73435 Xenopus laevis AAH73435 I 0.796
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.796
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.796
LOC100054235 Equus caballus ENSECAG00000009396 I 0.796
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.796
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.796
Gm10110 Mus musculus ENSMUSG00000062093 I 0.792
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.792
PABPC4 Homo sapiens ENSG00000090621 D 0.792
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.792
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.792
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.792
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.792
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.792
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.792
PABPC4 Gallus gallus ENSGALG00000003800 I 0.792
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.789
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.789
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.789
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.789
pabpc4 Danio rerio ENSDARG00000059259 I 0.785
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.782
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.781
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.774
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.774
PABPC1L Gallus gallus ENSGALG00000004123 I 0.771
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.771
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.771
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.771
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.767
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.763
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.756
AAH71118 Xenopus laevis AAH71118 I 0.756
AAH80020 Xenopus laevis AAH80020 I 0.756
Q6GR16 Xenopus laevis Q6GR16 I 0.756
AAK29408 Xenopus laevis AAK29408 I 0.756
Q98SP8 Xenopus laevis Q98SP8 I 0.756
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.756
pabpc1l Danio rerio ENSDARG00000002597 I 0.753
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.749
LOC100056021 Equus caballus ENSECAG00000020699 I 0.742
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.742
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.738
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.738
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.738
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.738
PABPC1L Bos taurus ENSBTAG00000016849 I 0.735
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.735
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.735
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.731
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.728
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.728
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.728
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.724
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.724
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.724
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.724
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.724
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.720
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.720
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.720
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.720
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.720
PABPC1L Homo sapiens ENSG00000101104 I 0.720
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.717
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.717
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.714
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.714
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.714
LOC100070836 Equus caballus ENSECAG00000022681 I 0.713
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.710
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.710
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.701