D4A8U2_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000007252 T41053_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.793
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.793
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.793
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.779
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000009539 RRM 15 84
ENSRNOP00000009539 RRM 106 174
ENSRNOP00000061392 RRM 15 84
ENSRNOP00000061392 RRM 106 173

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002690 Ailuropoda melanoleuca Ame_R002690 I 0.000
ZNF638 Bos taurus ENSBTAG00000009242 I 0.000
ZNF638 Callithrix jacchus ENSCJAG00000019436 I 0.000
ZNF638 Canis familiaris ENSCAFG00000009067 I 0.000
ZNF638 Cavia porcellus ENSCPOG00000010101 I 0.000
ZNF638 Dasypus novemcinctus ENSDNOG00000002173 I 0.000
Zfml Dipodomys ordii ENSDORG00000007360 I 0.000
ZNF638 Equus caballus ENSECAG00000007715 I 0.000
ZNF638 Gorilla gorilla ENSGGOG00000012511 I 0.000
ZNF638 Homo sapiens ENSG00000075292 D 0.000
ZNF638 Loxodonta africana ENSLAFG00000008513 I 0.000
ZNF638 Macaca mulatta ENSMMUG00000007175 I 0.000
Zfml Mus musculus ENSMUSG00000030016 N 0.000
ZNF638 Pan troglodytes ENSPTRG00000012048 I 0.000
ZNF638 Pteropus vampyrus ENSPVAG00000008368 I 0.000
Zfml Rattus norvegicus ENSRNOG00000014501 I 0.000
ZNF638 Sorex araneus ENSSARG00000000956 I 0.000
ZNF638 Tarsius syrichta ENSTSYG00000012849 I 0.000
ZNF638 Tursiops truncatus ENSTTRG00000014220 I 0.000
ZNF638 Vicugna pacos ENSVPAG00000004117 I 0.000