CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Rbm42
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000024278
T41168_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
1.000
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.958
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000029729
RRM
381
451
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s15230g22t1
Acyrtosiphon pisum
DGIL_AUG5s15230g22t1
I
0.000
AAEL010642
Aedes aegypti
AAEL010642
I
0.761
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
1.000
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.972
AGAP010200
Anopheles gambiae
AGAP010200
I
0.746
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.732
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.000
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
1.000
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.873
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.873
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
1.000
RBM42
Canis familiaris
ENSCAFG00000006925
I
1.000
RBM42
Cavia porcellus
ENSCPOG00000012365
I
1.000
CpipJ_CPIJ005997
Culex pipiens
CpipJ_CPIJ005997
I
0.000
CPIJ005997
Culex quinquefasciatus
CPIJ005997
I
0.000
rbm42
Danio rerio
ENSDARG00000039910
I
0.944
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.789
GF11626
Drosophila ananassae
FBgn0088666
I
0.704
GG10948
Drosophila erecta
FBgn0103251
I
0.000
GH22277
Drosophila grimshawi
FBgn0129737
I
0.718
CG2931
Drosophila melanogaster
FBgn0037342
D
0.704
GI23084
Drosophila mojavensis
FBgn0145811
I
0.000
GA15528-RA
Drosophila pseudoobscura
FBgn0075545
I
0.718
GM10617
Drosophila sechellia
FBgn0165563
I
0.704
GD19605
Drosophila simulans
FBgn0191097
I
0.000
GJ22705
Drosophila virilis
FBgn0209809
I
0.718
GK12952
Drosophila willistoni
FBgn0214961
I
0.718
GE24162
Drosophila yakuba
FBgn0241294
I
0.704
LOC100051102
Equus caballus
ENSECAG00000018215
I
1.000
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
1.000
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
1.000
RBM42
Homo sapiens
ENSG00000126254
D
1.000
RBM42
Macaca mulatta
ENSMMUG00000018954
I
1.000
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
1.000
Minc13155
Meloidogyne incognita
Minc13155
I
0.718
RBM42
Microcebus murinus
ENSMICG00000009880
I
1.000
RBM42
Monodelphis domestica
ENSMODG00000013957
I
1.000
Rbm42
Mus musculus
ENSMUSG00000036733
I
1.000
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
1.000
RBM42
Ochotona princeps
ENSOPRG00000001229
I
1.000
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
1.000
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
1.000
RBM42
Pan troglodytes
ENSPTRG00000010852
I
1.000
PHUM106890
Pediculus humanus
PHUM106890
I
0.746
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.718
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
1.000
RBM42
Procavia capensis
ENSPCAG00000013053
I
1.000
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
1.000
RBM42
Sorex araneus
ENSSARG00000010724
I
1.000
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
1.000
RBM42
Sus scrofa
ENSSSCG00000002905
I
1.000
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
1.000
A2VDB3
Xenopus laevis
A2VDB3
I
0.944
AAI29698
Xenopus laevis
AAI29698
I
0.944
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.958