Rbm42 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000024278 T41168_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		1.000
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000029729 RRM 381 451

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL014033 Aedes aegypti AAEL014033 I 0.000
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.000
AGAP004950 Anopheles gambiae AGAP004950 I 0.000
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.000
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.000
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.000
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.000
CJA07020 Caenorhabditis japonica CJA07020 I 0.000
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.000
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.000
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.000
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.000
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.000
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.000
GF10965 Drosophila ananassae FBgn0088005 I 0.000
GG13757 Drosophila erecta FBgn0106020 I 0.000
GH14684 Drosophila grimshawi FBgn0122160 I 0.000
bru-3 Drosophila melanogaster FBgn0262350 D 0.000
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.000
GL21647 Drosophila persimilis FBgn0159240 I 0.000
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.000
GM24582 Drosophila sechellia FBgn0179445 I 0.000
GD12651 Drosophila simulans FBgn0184378 I 0.000
GJ13842 Drosophila virilis FBgn0201061 I 0.000
GK17101 Drosophila willistoni FBgn0219100 I 0.000
GE20053 Drosophila yakuba FBgn0237378 I 0.000
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.000
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.000
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.000
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.000
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.000
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.000
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.000
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.000
90208 Helobdella robusta 90208 I 0.000
62054 Helobdella robusta 62054 I 0.000
BRUNOL6 Homo sapiens ENSG00000140488 D 0.000
LOAG_05508 Loa loa LOAG_05508 I 0.000
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.000
HEXA Macaca mulatta ENSMMUG00000010687 I 0.000
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.000
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.000
Celf6 Mus musculus ENSMUSG00000032297 I 0.000
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.000
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.000
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.000
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.000
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.000
CELF6 Oryzias latipes ENSORLG00000013392 I 0.000
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.000
PHUM315130 Pediculus humanus PHUM315130 I 0.000
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.000
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.000
Smp_041280 Schistosoma mansoni Smp_041280 I 0.000
Smp_131780 Schistosoma mansoni Smp_131780 I 0.000
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.000
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.000
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.000
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.000
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.000
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.000