Rbm42 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000024278 T41168_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		1.000
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000029729 RRM 381 451

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.000
AAEL010642 Aedes aegypti AAEL010642 I 0.761
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 1.000
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.972
AGAP010200 Anopheles gambiae AGAP010200 I 0.746
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.732
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.000
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 1.000
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.873
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.873
RBM42 Callithrix jacchus ENSCJAG00000010220 I 1.000
RBM42 Canis familiaris ENSCAFG00000006925 I 1.000
RBM42 Cavia porcellus ENSCPOG00000012365 I 1.000
CpipJ_CPIJ005997 Culex pipiens CpipJ_CPIJ005997 I 0.000
CPIJ005997 Culex quinquefasciatus CPIJ005997 I 0.000
rbm42 Danio rerio ENSDARG00000039910 I 0.944
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.789
GF11626 Drosophila ananassae FBgn0088666 I 0.704
GG10948 Drosophila erecta FBgn0103251 I 0.000
GH22277 Drosophila grimshawi FBgn0129737 I 0.718
CG2931 Drosophila melanogaster FBgn0037342 D 0.704
GI23084 Drosophila mojavensis FBgn0145811 I 0.000
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.718
GM10617 Drosophila sechellia FBgn0165563 I 0.704
GD19605 Drosophila simulans FBgn0191097 I 0.000
GJ22705 Drosophila virilis FBgn0209809 I 0.718
GK12952 Drosophila willistoni FBgn0214961 I 0.718
GE24162 Drosophila yakuba FBgn0241294 I 0.704
LOC100051102 Equus caballus ENSECAG00000018215 I 1.000
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 1.000
RBM42 Gorilla gorilla ENSGGOG00000009972 I 1.000
RBM42 Homo sapiens ENSG00000126254 D 1.000
RBM42 Macaca mulatta ENSMMUG00000018954 I 1.000
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 1.000
Minc13155 Meloidogyne incognita Minc13155 I 0.718
RBM42 Microcebus murinus ENSMICG00000009880 I 1.000
RBM42 Monodelphis domestica ENSMODG00000013957 I 1.000
Rbm42 Mus musculus ENSMUSG00000036733 I 1.000
RBM42 Myotis lucifugus ENSMLUG00000011334 I 1.000
RBM42 Ochotona princeps ENSOPRG00000001229 I 1.000
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 1.000
RBM42 Otolemur garnettii ENSOGAG00000004144 I 1.000
RBM42 Pan troglodytes ENSPTRG00000010852 I 1.000
PHUM106890 Pediculus humanus PHUM106890 I 0.746
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.718
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 1.000
RBM42 Procavia capensis ENSPCAG00000013053 I 1.000
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 1.000
RBM42 Sorex araneus ENSSARG00000010724 I 1.000
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 1.000
RBM42 Sus scrofa ENSSSCG00000002905 I 1.000
RBM42 Tarsius syrichta ENSTSYG00000014688 I 1.000
A2VDB3 Xenopus laevis A2VDB3 I 0.944
AAI29698 Xenopus laevis AAI29698 I 0.944
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.958