ENSSSCG00000016275 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000016275 T41533_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.841
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000017242 RRM 1 31
ENSSSCP00000017242 RRM 49 114
ENSSSCP00000017242 RRM 142 208
ENSSSCP00000017242 RRM 228 295

Links

Other RRM family RBPs
Other Sus scrofa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.844
NCL Bos taurus ENSBTAG00000016174 I 0.848
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.830
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.837
NCL Canis familiaris ENSCAFG00000011037 I 0.844
NCL Cavia porcellus ENSCPOG00000001034 I 0.748
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.750
Ncl Dipodomys ordii ENSDORG00000012513 I 0.767
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.815
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.815
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.844
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.793
NCL Gorilla gorilla ENSGGOG00000004300 I 0.841
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.705
NCL Homo sapiens ENSG00000115053 D 0.841
NCL Macaca mulatta ENSMMUG00000018094 I 0.841
NCL Macropus eugenii ENSMEUG00000012335 I 0.708
NCL Microcebus murinus ENSMICG00000002538 I 0.811
NCL Monodelphis domestica ENSMODG00000002470 I 0.708
Ncl Mus musculus ENSMUSG00000026234 I 0.778
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.720
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.844
NCL Pan troglodytes ENSPTRG00000013025 I 0.841
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.930
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.848
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.791
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.789
NCL Tarsius syrichta ENSTSYG00000004355 I 0.833
NCL Tursiops truncatus ENSTTRG00000009094 I 0.837