mgf001428m (Mimulus guttatus)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		mgf001428m T00207_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf001428m CCCH ZF 36 60
mgf001428m CCCH ZF 96 122
mgf001428m KH 162 224
mgf001428m CCCH ZF 267 292

Links

Other CCCH ZF,KH family RBPs
Other Mimulus guttatus RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.780
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.766
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.766
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.766
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.766
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.766
ppa009199m Prunus persica ppa009199m N 0.766
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.761
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.759
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.752
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.752
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.752
ppa009316m Prunus persica ppa009316m N 0.745
SB06G032000 Sorghum bicolor Sb06g032000 N 0.739
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.738
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.738
27843.m000162 Ricinus communis 27843.m000162 N 0.738
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.732
mgf003025m Mimulus guttatus mgf003025m N 0.730
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.730
27843.m000161 Ricinus communis 27843.m000161 N 0.730
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.727
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.727
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.727
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.713
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.711
SB04G006450 Sorghum bicolor Sb04g006450 N 0.709
mgf010445m Mimulus guttatus mgf010445m N 0.709
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.706
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.706
MDP0000217837 Malus x domestica MDP0000217837 N 0.702