MDP0000217837 (Malus x domestica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		MDP0000217837 T00225_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000217837 CCCH ZF 36 60
MDP0000217837 CCCH ZF 101 126
MDP0000217837 KH 170 232
MDP0000217837 CCCH ZF 270 295

Links

Other CCCH ZF,KH family RBPs
Other Malus x domestica RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009316m Prunus persica ppa009316m N 0.921
MDP0000176924 Malus x domestica MDP0000176924 N 0.879
MDP0000202971 Malus x domestica MDP0000202971 N 0.879
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.871
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.857
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.857
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.850
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.843
27843.m000161 Ricinus communis 27843.m000161 N 0.843
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.843
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.836
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.836
27843.m000162 Ricinus communis 27843.m000162 N 0.836
ppa009199m Prunus persica ppa009199m N 0.836
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.831
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.831
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.816
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.810
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.807
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.801
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.800
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.800
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.794
SB06G032000 Sorghum bicolor Sb06g032000 N 0.794
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.782
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.782
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.779
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.773
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.769
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.768
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.768
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.768
mgf010445m Mimulus guttatus mgf010445m N 0.764
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.764
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.761
SB04G006450 Sorghum bicolor Sb04g006450 N 0.750
mgf003025m Mimulus guttatus mgf003025m N 0.750
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.741
MDP0000120315 Malus x domestica MDP0000120315 N 0.736
MDP0000130160 Malus x domestica MDP0000130160 N 0.736
MDP0000275117 Malus x domestica MDP0000275117 N 0.736
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.730
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.723
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.707
mgf001428m Mimulus guttatus mgf001428m N 0.702