SB04G006450 (Sorghum bicolor)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Sb04g006450 T00178_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb04g006450.1 CCCH ZF 35 59
Sb04g006450.1 CCCH ZF 96 121
Sb04g006450.1 KH 167 229
Sb04g006450.1 CCCH ZF 261 286

Links

Other CCCH ZF,KH family RBPs
Other Sorghum bicolor RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.930
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.930
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.895
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.866
ppa009199m Prunus persica ppa009199m N 0.850
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.844
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.838
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.831
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.831
SB06G032000 Sorghum bicolor Sb06g032000 N 0.823
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.823
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.821
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.821
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.821
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.821
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.821
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.818
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.817
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.816
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.814
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.814
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.807
ppa009316m Prunus persica ppa009316m N 0.807
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.807
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.800
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.796
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.794
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.786
27843.m000162 Ricinus communis 27843.m000162 N 0.786
27843.m000161 Ricinus communis 27843.m000161 N 0.779
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.775
mgf003025m Mimulus guttatus mgf003025m N 0.771
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.759
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.757
MDP0000130160 Malus x domestica MDP0000130160 N 0.750
MDP0000275117 Malus x domestica MDP0000275117 N 0.750
MDP0000217837 Malus x domestica MDP0000217837 N 0.750
MDP0000120315 Malus x domestica MDP0000120315 N 0.750
mgf010445m Mimulus guttatus mgf010445m N 0.750
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.736
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.732
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.732
MDP0000176924 Malus x domestica MDP0000176924 N 0.714
MDP0000202971 Malus x domestica MDP0000202971 N 0.714
mgf001428m Mimulus guttatus mgf001428m N 0.709
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.707
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.702