SB06G032000 (Sorghum bicolor)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Sb06g032000 T00179_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb06g032000.1 CCCH ZF 38 62
Sb06g032000.1 CCCH ZF 105 131
Sb06g032000.1 KH 175 237
Sb06g032000.1 CCCH ZF 273 298

Links

Other CCCH ZF,KH family RBPs
Other Sorghum bicolor RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.957
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.922
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.922
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.908
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.852
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.852
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.851
ppa009199m Prunus persica ppa009199m N 0.837
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.832
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.824
SB04G006450 Sorghum bicolor Sb04g006450 N 0.823
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.817
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.817
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.816
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.816
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.816
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.810
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.810
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.809
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.809
ppa009316m Prunus persica ppa009316m N 0.809
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.801
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.801
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.801
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.801
27843.m000161 Ricinus communis 27843.m000161 N 0.794
MDP0000217837 Malus x domestica MDP0000217837 N 0.794
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.790
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.787
27843.m000162 Ricinus communis 27843.m000162 N 0.787
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.782
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.768
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.768
mgf003025m Mimulus guttatus mgf003025m N 0.759
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.754
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.752
mgf010445m Mimulus guttatus mgf010445m N 0.745
mgf001428m Mimulus guttatus mgf001428m N 0.739
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.734
MDP0000202971 Malus x domestica MDP0000202971 N 0.730
MDP0000176924 Malus x domestica MDP0000176924 N 0.730
MDP0000130160 Malus x domestica MDP0000130160 N 0.723
MDP0000120315 Malus x domestica MDP0000120315 N 0.723
MDP0000275117 Malus x domestica MDP0000275117 N 0.723
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.716
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.704