mgf010445m (Mimulus guttatus)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		mgf010445m T00209_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf010445m CCCH ZF 32 56
mgf010445m CCCH ZF 99 124
mgf010445m KH 167 229
mgf010445m CCCH ZF 258 283

Links

Other CCCH ZF,KH family RBPs
Other Mimulus guttatus RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27843.m000162 Ricinus communis 27843.m000162 N 0.829
27843.m000161 Ricinus communis 27843.m000161 N 0.829
ppa009316m Prunus persica ppa009316m N 0.814
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.814
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.814
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.814
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.814
mgf003025m Mimulus guttatus mgf003025m N 0.814
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.801
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.800
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.800
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.800
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.800
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.789
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.786
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.780
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.779
ppa009199m Prunus persica ppa009199m N 0.779
MDP0000217837 Malus x domestica MDP0000217837 N 0.764
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.761
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.761
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.759
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.757
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.750
SB04G006450 Sorghum bicolor Sb04g006450 N 0.750
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.746
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.746
SB06G032000 Sorghum bicolor Sb06g032000 N 0.745
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.741
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.739
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.739
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.739
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.734
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.732
MDP0000176924 Malus x domestica MDP0000176924 N 0.729
MDP0000202971 Malus x domestica MDP0000202971 N 0.729
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.723
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.716
mgf001428m Mimulus guttatus mgf001428m N 0.709
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.702