BRADI5G25340 (Brachypodium distachyon)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		BRADI5G25340 T00164_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI5G25340.1 CCCH ZF 35 59
BRADI5G25340.1 CCCH ZF 99 125
BRADI5G25340.1 KH 168 230
BRADI5G25340.1 CCCH ZF 264 289

Links

Other CCCH ZF,KH family RBPs
Other Brachypodium distachyon RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.929
SB06G032000 Sorghum bicolor Sb06g032000 N 0.908
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.908
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.887
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.858
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.852
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.852
ppa009199m Prunus persica ppa009199m N 0.851
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.831
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.830
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.830
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.830
ppa009316m Prunus persica ppa009316m N 0.830
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.830
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.823
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.823
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.823
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.818
SB04G006450 Sorghum bicolor Sb04g006450 N 0.816
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.816
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.810
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.810
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.810
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.809
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.809
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.803
27843.m000161 Ricinus communis 27843.m000161 N 0.801
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.797
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.796
27843.m000162 Ricinus communis 27843.m000162 N 0.794
MDP0000217837 Malus x domestica MDP0000217837 N 0.794
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.780
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.775
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.775
mgf003025m Mimulus guttatus mgf003025m N 0.773
mgf001428m Mimulus guttatus mgf001428m N 0.761
mgf010445m Mimulus guttatus mgf010445m N 0.759
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.745
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.739
MDP0000176924 Malus x domestica MDP0000176924 N 0.738
MDP0000120315 Malus x domestica MDP0000120315 N 0.738
MDP0000202971 Malus x domestica MDP0000202971 N 0.738
MDP0000275117 Malus x domestica MDP0000275117 N 0.738
MDP0000130160 Malus x domestica MDP0000130160 N 0.738
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.727
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.725
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.716