27843.m000162 (Ricinus communis)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		27843.m000162 T00186_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
27843.m000162 CCCH ZF 34 58
27843.m000162 CCCH ZF 101 126
27843.m000162 KH 170 232
27843.m000162 CCCH ZF 262 287

Links

Other CCCH ZF,KH family RBPs
Other Ricinus communis RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27843.m000161 Ricinus communis 27843.m000161 N 0.979
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.950
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.914
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.914
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.914
ppa009316m Prunus persica ppa009316m N 0.907
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.907
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.900
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.893
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.886
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.872
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.871
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.871
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.866
ppa009199m Prunus persica ppa009199m N 0.864
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.864
MDP0000217837 Malus x domestica MDP0000217837 N 0.836
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.831
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.831
mgf010445m Mimulus guttatus mgf010445m N 0.829
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.817
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.817
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.810
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.810
mgf003025m Mimulus guttatus mgf003025m N 0.807
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.804
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.801
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.801
MDP0000202971 Malus x domestica MDP0000202971 N 0.800
MDP0000176924 Malus x domestica MDP0000176924 N 0.800
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.796
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.794
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.793
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.790
SB06G032000 Sorghum bicolor Sb06g032000 N 0.787
SB04G006450 Sorghum bicolor Sb04g006450 N 0.786
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.782
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.771
MDP0000275117 Malus x domestica MDP0000275117 N 0.764
MDP0000130160 Malus x domestica MDP0000130160 N 0.764
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.764
MDP0000120315 Malus x domestica MDP0000120315 N 0.764
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.759
mgf001428m Mimulus guttatus mgf001428m N 0.738
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.732
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.730
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.711