BRADI1G35920 (Brachypodium distachyon)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		BRADI1G35920 T00160_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G35920.1 CCCH ZF 34 60
BRADI1G35920.1 CCCH ZF 101 126
BRADI1G35920.1 KH 172 234
BRADI1G35920.1 CCCH ZF 264 289

Links

Other CCCH ZF,KH family RBPs
Other Brachypodium distachyon RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.923
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.923
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.902
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.894
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.873
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.873
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.867
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.831
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.831
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.831
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.831
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.824
SB04G006450 Sorghum bicolor Sb04g006450 N 0.817
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.817
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.817
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.811
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.810
ppa009199m Prunus persica ppa009199m N 0.810
SB06G032000 Sorghum bicolor Sb06g032000 N 0.810
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.810
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.810
ppa009316m Prunus persica ppa009316m N 0.803
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.803
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.803
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.803
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.803
27843.m000162 Ricinus communis 27843.m000162 N 0.796
27843.m000161 Ricinus communis 27843.m000161 N 0.796
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.782
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.782
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.768
mgf003025m Mimulus guttatus mgf003025m N 0.768
MDP0000217837 Malus x domestica MDP0000217837 N 0.761
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.739
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.739
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.739
mgf010445m Mimulus guttatus mgf010445m N 0.732
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.725
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.722
mgf001428m Mimulus guttatus mgf001428m N 0.713
MDP0000176924 Malus x domestica MDP0000176924 N 0.711
MDP0000202971 Malus x domestica MDP0000202971 N 0.711
MDP0000120315 Malus x domestica MDP0000120315 N 0.704
MDP0000130160 Malus x domestica MDP0000130160 N 0.704
MDP0000275117 Malus x domestica MDP0000275117 N 0.704