27843.m000161 (Ricinus communis)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		27843.m000161 T00185_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
27843.m000161 CCCH ZF 34 58
27843.m000161 CCCH ZF 101 126
27843.m000161 KH 170 232
27843.m000161 CCCH ZF 262 287

Links

Other CCCH ZF,KH family RBPs
Other Ricinus communis RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27843.m000162 Ricinus communis 27843.m000162 N 0.979
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.943
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.914
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.914
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.914
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.907
ppa009316m Prunus persica ppa009316m N 0.900
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.900
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.900
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.893
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.871
ppa009199m Prunus persica ppa009199m N 0.871
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.866
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.865
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.864
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.864
MDP0000217837 Malus x domestica MDP0000217837 N 0.843
mgf010445m Mimulus guttatus mgf010445m N 0.829
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.824
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.824
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.810
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.810
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.810
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.810
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.809
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.807
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.801
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.801
mgf003025m Mimulus guttatus mgf003025m N 0.800
MDP0000202971 Malus x domestica MDP0000202971 N 0.800
MDP0000176924 Malus x domestica MDP0000176924 N 0.800
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.797
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.796
SB06G032000 Sorghum bicolor Sb06g032000 N 0.794
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.789
SB04G006450 Sorghum bicolor Sb04g006450 N 0.779
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.776
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.773
MDP0000130160 Malus x domestica MDP0000130160 N 0.771
MDP0000275117 Malus x domestica MDP0000275117 N 0.771
MDP0000120315 Malus x domestica MDP0000120315 N 0.771
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.764
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.757
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.738
mgf001428m Mimulus guttatus mgf001428m N 0.730
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.725
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.718