cassava36490.valid.m1 (Manihot esculenta)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		cassava36490.valid.m1 T00190_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava36490.valid.m1 CCCH ZF 33 57
cassava36490.valid.m1 CCCH ZF 99 124
cassava36490.valid.m1 KH 168 230
cassava36490.valid.m1 CCCH ZF 260 285

Links

Other CCCH ZF,KH family RBPs
Other Manihot esculenta RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27843.m000162 Ricinus communis 27843.m000162 N 0.950
27843.m000161 Ricinus communis 27843.m000161 N 0.943
ppa009316m Prunus persica ppa009316m N 0.914
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.914
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.907
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.907
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.900
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.893
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.879
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.871
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.866
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.858
MDP0000217837 Malus x domestica MDP0000217837 N 0.857
ppa009199m Prunus persica ppa009199m N 0.857
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.857
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.857
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.852
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.852
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.850
MDP0000176924 Malus x domestica MDP0000176924 N 0.821
MDP0000202971 Malus x domestica MDP0000202971 N 0.821
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.810
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.810
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.809
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.809
mgf010445m Mimulus guttatus mgf010445m N 0.800
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.800
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.797
mgf003025m Mimulus guttatus mgf003025m N 0.793
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.789
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.789
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.787
SB06G032000 Sorghum bicolor Sb06g032000 N 0.787
SB04G006450 Sorghum bicolor Sb04g006450 N 0.786
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.782
MDP0000130160 Malus x domestica MDP0000130160 N 0.771
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.771
MDP0000275117 Malus x domestica MDP0000275117 N 0.771
MDP0000120315 Malus x domestica MDP0000120315 N 0.771
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.769
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.768
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.766
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.757
mgf001428m Mimulus guttatus mgf001428m N 0.752
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.738
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.732