Medtr1g147310 (Medicago truncatula)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Medtr1g147310 T00216_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g147310.1 CCCH ZF 3 18
Medtr1g147310.1 CCCH ZF 62 87
Medtr1g147310.1 KH 134 196
Medtr1g147310.1 CCCH ZF 225 250

Links

Other CCCH ZF,KH family RBPs
Other Medicago truncatula RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.850
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.843
MDP0000275117 Malus x domestica MDP0000275117 N 0.817
MDP0000120315 Malus x domestica MDP0000120315 N 0.817
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.816
MDP0000130160 Malus x domestica MDP0000130160 N 0.805
ppa009199m Prunus persica ppa009199m N 0.800
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.800
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.793
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.793
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.793
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.793
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.789
MDP0000176924 Malus x domestica MDP0000176924 N 0.786
MDP0000202971 Malus x domestica MDP0000202971 N 0.786
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.773
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.764
27843.m000162 Ricinus communis 27843.m000162 N 0.764
27843.m000161 Ricinus communis 27843.m000161 N 0.757
ppa009316m Prunus persica ppa009316m N 0.757
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.757
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.750
mgf003025m Mimulus guttatus mgf003025m N 0.750
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.739
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.739
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.729
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.726
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.725
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.716
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.716
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.716
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.713
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.707
SB04G006450 Sorghum bicolor Sb04g006450 N 0.707
MDP0000217837 Malus x domestica MDP0000217837 N 0.707