BGIOSIBCE022629 (Oryza indica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		BGIOSIBCE022629 T00159_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE022629 CCCH ZF 52 71
BGIOSIBCE022629 CCCH ZF 112 137
BGIOSIBCE022629 KH 180 242
BGIOSIBCE022629 CCCH ZF 272 297

Links

Other CCCH ZF,KH family RBPs
Other Oryza indica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.923
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.873
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.866
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.846
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.824
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.824
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.824
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.797
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.793
SB04G006450 Sorghum bicolor Sb04g006450 N 0.775
MDP0000202971 Malus x domestica MDP0000202971 N 0.763
MDP0000176924 Malus x domestica MDP0000176924 N 0.763
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.761
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.754
SB06G032000 Sorghum bicolor Sb06g032000 N 0.754
MDP0000120315 Malus x domestica MDP0000120315 N 0.748
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.748
MDP0000130160 Malus x domestica MDP0000130160 N 0.748
MDP0000275117 Malus x domestica MDP0000275117 N 0.748
ppa009199m Prunus persica ppa009199m N 0.746
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.741
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.739
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.739
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.739
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.732
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.732
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.732
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.732
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.732
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.732
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.732
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.726
ppa009316m Prunus persica ppa009316m N 0.725
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.723
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.718
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.718
27843.m000161 Ricinus communis 27843.m000161 N 0.718
27843.m000162 Ricinus communis 27843.m000162 N 0.711