BGIOSIBCE016974 (Oryza indica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		BGIOSIBCE016974 T00158_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE016974 CCCH ZF 217 232
BGIOSIBCE016974 CCCH ZF 274 300
BGIOSIBCE016974 KH 347 409
BGIOSIBCE016974 CCCH ZF 446 471

Links

Other CCCH ZF,KH family RBPs
Other Oryza indica RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.922
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.858
SB06G032000 Sorghum bicolor Sb06g032000 N 0.851
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.837
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.823
MDP0000120315 Malus x domestica MDP0000120315 N 0.803
MDP0000202971 Malus x domestica MDP0000202971 N 0.803
MDP0000176924 Malus x domestica MDP0000176924 N 0.803
MDP0000275117 Malus x domestica MDP0000275117 N 0.803
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.796
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.796
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.793
MDP0000130160 Malus x domestica MDP0000130160 N 0.791
ppa009199m Prunus persica ppa009199m N 0.780
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.773
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.773
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.773
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.773
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.773
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.769
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.766
ppa009316m Prunus persica ppa009316m N 0.766
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.762
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.761
SB04G006450 Sorghum bicolor Sb04g006450 N 0.759
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.754
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.752
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.752
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.752
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.752
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.746
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.746
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.739
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.739
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.738
27843.m000161 Ricinus communis 27843.m000161 N 0.738
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.731
MDP0000217837 Malus x domestica MDP0000217837 N 0.730
27843.m000162 Ricinus communis 27843.m000162 N 0.730
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.727
mgf003025m Mimulus guttatus mgf003025m N 0.723
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.709
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.704
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.704
mgf010445m Mimulus guttatus mgf010445m N 0.702