MDP0000120315 (Malus x domestica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		MDP0000120315 T00221_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000120315 CCCH ZF 57 72
MDP0000120315 CCCH ZF 114 139
MDP0000120315 KH 185 247
MDP0000120315 CCCH ZF 277 302

Links

Other CCCH ZF,KH family RBPs
Other Malus x domestica RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000275117 Malus x domestica MDP0000275117 N 0.969
MDP0000130160 Malus x domestica MDP0000130160 N 0.962
ppa009199m Prunus persica ppa009199m N 0.879
MDP0000176924 Malus x domestica MDP0000176924 N 0.817
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.817
MDP0000202971 Malus x domestica MDP0000202971 N 0.817
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.809
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.803
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.793
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.793
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.789
ppa009316m Prunus persica ppa009316m N 0.786
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.786
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.779
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.779
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.779
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.779
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.775
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.775
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.771
27843.m000161 Ricinus communis 27843.m000161 N 0.771
27843.m000162 Ricinus communis 27843.m000162 N 0.764
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.755
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.752
SB04G006450 Sorghum bicolor Sb04g006450 N 0.750
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.750
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.748
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.743
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.739
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.738
MDP0000217837 Malus x domestica MDP0000217837 N 0.736
mgf003025m Mimulus guttatus mgf003025m N 0.729
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.729
SB06G032000 Sorghum bicolor Sb06g032000 N 0.723
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.722
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.721
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.720
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.718
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.718
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.716
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.711
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.704