estExt_fgenesh1_pm.C_2810008 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pm.C_2810008 T50709_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_2810008 RRM 26 96
estExt_fgenesh1_pm.C_2810008 RRM 114 183
estExt_fgenesh1_pm.C_2810008 RRM 205 274
estExt_fgenesh1_pm.C_2810008 RRM 308 377

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.893
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.886
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.883
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.786
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.772
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.769
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.769
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.769
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.765
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.765
29801.m003152 Ricinus communis 29801.m003152 N 0.765
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.762
MDP0000253709 Malus x domestica MDP0000253709 N 0.758
MDP0000156895 Malus x domestica MDP0000156895 N 0.758
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.758
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.758
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.754
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.754
30170.m013847 Ricinus communis 30170.m013847 N 0.751
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.751
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.751
ppa002607m Prunus persica ppa002607m N 0.751
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.747
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.747
MDP0000497543 Malus x domestica MDP0000497543 N 0.747
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.747
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.744
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.744
mgf009542m Mimulus guttatus mgf009542m N 0.744
ppa002620m Prunus persica ppa002620m N 0.744
ppa002618m Prunus persica ppa002618m N 0.744
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.744
MDP0000283985 Malus x domestica MDP0000283985 N 0.740
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.740
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.740
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.740
mgf004973m Mimulus guttatus mgf004973m N 0.740
PK02172.1 Cannabis sativa PK02172.1 N 0.737
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.733
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.730
PK00659.1 Cannabis sativa PK00659.1 N 0.726
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.723
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.723
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.716
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.715
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.712
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.712
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.712
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.708
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.705
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.705
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.701
mgf005294m Mimulus guttatus mgf005294m N 0.701