CPEB4 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000016981 T41538_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.793
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.757
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000017991 RRM 474 541
ENSSSCP00000017991 RRM 584 653

Links

Other RRM family RBPs
Other Sus scrofa RBPs

134 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.799
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.799
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.799
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.799
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.799
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.799
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.799
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.799
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.799
LOC100058918 Equus caballus ENSECAG00000016921 I 0.799
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.799
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.799
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.799
ADH10187 Xenopus laevis ADH10187 I 0.799
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.799
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.799
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.799
CPEB4 Homo sapiens ENSG00000113742 D 0.799
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.799
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.799
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.799
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.799
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.799
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.799
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.799
CPEB4 Danio rerio ENSDARG00000060495 I 0.799
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.799
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.799
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.799
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.793
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.793
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.791
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.791
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.791
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.791
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.791
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.791
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.787
CPEB4 Gallus gallus ENSGALG00000014074 I 0.787
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.787
CPEB4 Sorex araneus ENSSARG00000013389 I 0.784
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.780
cpeb3 Danio rerio ENSDARG00000060103 I 0.779
CPEB3 Bos taurus ENSBTAG00000015450 I 0.777
CPEB3 Gallus gallus ENSGALG00000006912 I 0.777
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.777
CPEB3 Homo sapiens ENSG00000107864 I 0.777
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.777
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.777
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.777
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.777
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.777
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.777
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.777
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.777
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.777
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.777
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.777
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.777
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.777
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.777
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.777
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.777
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.777
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.777
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.771
CPEB3 Sorex araneus ENSSARG00000001994 I 0.771
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.771
CPEB3 Equus caballus ENSECAG00000000077 I 0.771
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.771
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.770
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.770
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.766
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.764
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.763
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.763
CPEB2 Equus caballus ENSECAG00000008722 I 0.763
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.763
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.763
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.763
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.763
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.763
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.763
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.763
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.763
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.763
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.763
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.763
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.763
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.763
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.763
CPEB2 Homo sapiens ENSG00000137449 D 0.763
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.763
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.763
CPEB2 Gallus gallus ENSGALG00000014516 I 0.763
CPEB2 Bos taurus ENSBTAG00000019847 I 0.763
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.763
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.763
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.759
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.757
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.755
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.755
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.741
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.741
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.739
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.739
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.736
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.736
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.736
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.736
ISCW010113 Ixodes scapularis ISCW010113 I 0.736
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.736
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.729
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.727
GF10140 Drosophila ananassae FBgn0087181 I 0.727
GH16131 Drosophila grimshawi FBgn0123602 I 0.725
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.725
GI12400 Drosophila mojavensis FBgn0135157 I 0.719
orb2 Drosophila melanogaster FBgn0262573 D 0.719
GE21274 Drosophila yakuba FBgn0238542 I 0.719
GK17460 Drosophila willistoni FBgn0219459 I 0.719
GJ12289 Drosophila virilis FBgn0199538 I 0.719
GG15051 Drosophila erecta FBgn0107305 I 0.719
GL20808 Drosophila persimilis FBgn0158403 I 0.719
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.719
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.717
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.714
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.712
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.710
PHUM335520 Pediculus humanus PHUM335520 I 0.710
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.707
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.707
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.707
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.705