cassava44219.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava44219.valid.m1 T49419_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava44219.valid.m1 RRM 102 171
cassava44219.valid.m1 RRM 194 250
cassava44219.valid.m1 RRM 297 361

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 1.000
29842.m003612 Ricinus communis 29842.m003612 N 0.845
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.836
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.787
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.783
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.778
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.778
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.769
PK10695.1 Cannabis sativa PK10695.1 I 0.764
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.764
MDP0000294628 Malus x domestica MDP0000294628 I 0.760
ppa006617m Prunus persica ppa006617m N 0.750
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.749
mgf014417m Mimulus guttatus mgf014417m N 0.745
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.744
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.726
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.726
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.726
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.726
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.726
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.725
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.720
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.715
mgf010468m Mimulus guttatus mgf010468m I 0.712
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.712
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.707
29666.m001436 Ricinus communis 29666.m001436 I 0.702