XM_002889837.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__1255__AT1G11650.2 T44479_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1255__AT1G11650.2 RRM 66 135
fgenesh2_kg.1__1255__AT1G11650.2 RRM 159 230
fgenesh2_kg.1__1255__AT1G11650.2 RRM 265 329

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.986
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.792
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.787
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.787
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.783
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.773
PK10695.1 Cannabis sativa PK10695.1 I 0.769
MDP0000294628 Malus x domestica MDP0000294628 I 0.764
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.760
mgf014417m Mimulus guttatus mgf014417m N 0.755
29842.m003612 Ricinus communis 29842.m003612 N 0.754
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.754
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.750
mgf010468m Mimulus guttatus mgf010468m I 0.750
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.749
ppa006617m Prunus persica ppa006617m N 0.745
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.744
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.726
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.726
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.726
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.726
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.726
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.720
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.720
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.720
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.716
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.710
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.710
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.707
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.707
ppa006577m Prunus persica ppa006577m I 0.707
MDP0000614064 Malus x domestica MDP0000614064 N 0.707
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.705
29666.m001436 Ricinus communis 29666.m001436 I 0.702
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.700