ATRBP45B (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT1G11650-TAIR-G T32632_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G11650.1-P RRM 64 133
AT1G11650.1-P RRM 157 228
AT1G11650.1-P RRM 263 306
AT1G11650.2-P RRM 64 133
AT1G11650.2-P RRM 157 228
AT1G11650.2-P RRM 263 327

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.986
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.797
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.792
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.783
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.778
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.778
PK10695.1 Cannabis sativa PK10695.1 I 0.774
MDP0000294628 Malus x domestica MDP0000294628 I 0.769
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.764
mgf010468m Mimulus guttatus mgf010468m I 0.755
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.754
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.750
ppa006617m Prunus persica ppa006617m N 0.750
mgf014417m Mimulus guttatus mgf014417m N 0.750
29842.m003612 Ricinus communis 29842.m003612 N 0.749
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.744
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.739
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.736
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.736
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.736
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.736
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.736
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.726
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.716
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.715
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.715
MDP0000614064 Malus x domestica MDP0000614064 N 0.712
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.710
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.710
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.710
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.707
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.705
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.702
ppa006577m Prunus persica ppa006577m I 0.702