ppa006617m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa006617m T58376_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006617m RRM 69 137
ppa006617m RRM 160 231
ppa006617m RRM 268 332

Links

Other RRM family RBPs
Other Prunus persica RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000294628 Malus x domestica MDP0000294628 I 0.913
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.854
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.854
PK10695.1 Cannabis sativa PK10695.1 I 0.840
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.840
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.840
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.835
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.835
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.816
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.801
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.793
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.791
29842.m003612 Ricinus communis 29842.m003612 N 0.774
mgf010468m Mimulus guttatus mgf010468m I 0.764
mgf014417m Mimulus guttatus mgf014417m N 0.760
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.750
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.750
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.750
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.745
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.736
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.736
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.736
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.736
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.736
29666.m001436 Ricinus communis 29666.m001436 I 0.726
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.716
ppa006577m Prunus persica ppa006577m I 0.716
MDP0000614064 Malus x domestica MDP0000614064 N 0.712
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.712
MDP0000223369 Malus x domestica MDP0000223369 N 0.707
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.707
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.707