MDP0000294628 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000294628 T57593_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000294628 RRM 47 115
MDP0000294628 RRM 138 209
MDP0000294628 RRM 246 310

Links

Other RRM family RBPs
Other Malus x domestica RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006617m Prunus persica ppa006617m N 0.913
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.869
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.864
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.864
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.864
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.864
PK10695.1 Cannabis sativa PK10695.1 I 0.854
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.854
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.854
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.830
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.811
29842.m003612 Ricinus communis 29842.m003612 N 0.784
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.779
mgf010468m Mimulus guttatus mgf010468m I 0.779
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.769
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.764
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.764
mgf014417m Mimulus guttatus mgf014417m N 0.764
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.764
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.764
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.764
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.764
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.760
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.760
29666.m001436 Ricinus communis 29666.m001436 I 0.745
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.740
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.740
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.736
ppa006577m Prunus persica ppa006577m I 0.726
MDP0000614064 Malus x domestica MDP0000614064 N 0.716
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.712
SB06G029180 Sorghum bicolor Sb06g029180 N 0.712
MDP0000223369 Malus x domestica MDP0000223369 N 0.712
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.712
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.712
SB01G016170 Sorghum bicolor Sb01g016170 N 0.710
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.707
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.702
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.702
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.700
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.700