CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000294628
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000294628
T57593_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6
RNAcompete CONSTRUCTS
UGUUUUD
RNAcompete
Ray et al.(2013)
RNCMPT00229
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000294628
RRM
47
115
LWIGDLQYWMEENYLYNIFLHTGEVVSVKVIRNKQTCQSEGYGFIEFNSRAAAERVLQAFNGTPMPNGA
MDP0000294628
RRM
138
209
IFVGDLAADVTDYVLQETFRARYPSCKSAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVLCSTRPMR
MDP0000294628
RRM
246
310
IFVGNLDGNVTDDHLRQVFSKYGELVHVKIPMGKRCGFVQFADRSCAEEALRVLNGSQLGAQNIR
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa006617m
Prunus persica
ppa006617m
N
0.913
Glyma07g38940.1
Glycine max
Glyma07g38940.1
I
0.869
Glyma13g27570.1
Glycine max
Glyma13g27570.1
I
0.864
Glyma15g11380.1
Glycine max
Glyma15g11380.1
I
0.864
Cucsa.085910
Cucumis sativus
Cucsa.085910
I
0.864
Glyma17g01800.1
Glycine max
Glyma17g01800.1
I
0.864
PK10695.1
Cannabis sativa
PK10695.1
I
0.854
Cucsa.085920
Cucumis sativus
Cucsa.085920
I
0.854
chr6.CM0139.780.nd
Lotus japonicus
chr6.CM0139.780.nd
I
0.854
Medtr8g146650
Medicago truncatula
Medtr8g146650
N
0.830
chr4.CM1334.150.nc
Lotus japonicus
chr4.CM1334.150.nc
N
0.811
29842.m003612
Ricinus communis
29842.m003612
N
0.784
B9H1C9_POPTR
Populus trichocarpa
POPTR_0004s01690
N
0.779
mgf010468m
Mimulus guttatus
mgf010468m
I
0.779
ATRBP45B
Arabidopsis thaliana
AT1G11650-TAIR-G
N
0.769
cassava37002.valid.m1
Manihot esculenta
cassava37002.valid.m1
I
0.764
cassava37003.valid.m1
Manihot esculenta
cassava37003.valid.m1
I
0.764
mgf014417m
Mimulus guttatus
mgf014417m
N
0.764
cassava37000.valid.m1
Manihot esculenta
cassava37000.valid.m1
I
0.764
cassava37001.valid.m1
Manihot esculenta
cassava37001.valid.m1
I
0.764
XM_002889837.1
Arabidopsis lyrata
fgenesh2_kg.1__1255__AT1G11650.2
N
0.764
cassava36999.valid.m1
Manihot esculenta
cassava36999.valid.m1
I
0.764
cassava44219.valid.m1
Manihot esculenta
cassava44219.valid.m1
N
0.760
cassava44220.valid.m1
Manihot esculenta
cassava44220.valid.m1
N
0.760
29666.m001436
Ricinus communis
29666.m001436
I
0.745
A9PGI8_POPTR
Populus trichocarpa
POPTR_0001s45000
I
0.740
cassava35906.valid.m1
Manihot esculenta
cassava35906.valid.m1
I
0.740
GRMZM2G426591
Zea mays
GRMZM2G426591
N
0.736
ppa006577m
Prunus persica
ppa006577m
I
0.726
MDP0000614064
Malus x domestica
MDP0000614064
N
0.716
LOC_Os03g37270
Oryza sativa
LOC_Os03g37270
N
0.712
SB06G029180
Sorghum bicolor
Sb06g029180
N
0.712
MDP0000223369
Malus x domestica
MDP0000223369
N
0.712
GRMZM2G012628
Zea mays
GRMZM2G012628
N
0.712
BRADI3G15180
Brachypodium distachyon
BRADI3G15180
N
0.712
SB01G016170
Sorghum bicolor
Sb01g016170
N
0.710
BGIOSIBSE038779
Oryza indica
BGIOSIBSE038779
N
0.707
LOC_Os08g09100
Oryza sativa
LOC_Os08g09100
N
0.702
XM_002867483.1
Arabidopsis lyrata
scaffold_701590.1
I
0.702
gw1.219.6.1
Physcomitrella patens
gw1.219.6.1
I
0.700
gw1.339.2.1
Physcomitrella patens
gw1.339.2.1
I
0.700