Glyma04g10900.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma04g10900.1 T52643_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma04g10900.1 RRM 40 108

Links

Other RRM family RBPs
Other Glycine max RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.971
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.899
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.899
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.884
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.884
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.884
PK15672.1 Cannabis sativa PK15672.1 I 0.870
ppa018926m Prunus persica ppa018926m I 0.855
ppa019392m Prunus persica ppa019392m I 0.855
29908.m006046 Ricinus communis 29908.m006046 I 0.855
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.855
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.841
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.841
MDP0000134468 Malus x domestica MDP0000134468 I 0.841
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.826
mgf017214m Mimulus guttatus mgf017214m I 0.826
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.826
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.812
PK21213.1 Cannabis sativa PK21213.1 I 0.812
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.812
MDP0000233609 Malus x domestica MDP0000233609 I 0.797
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.797
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.797
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.783
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.783
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.783
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.783
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.783
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.768
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.768
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.768
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.768
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.768
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.754
MDP0000744398 Malus x domestica MDP0000744398 I 0.754
CU179634_3 Medicago truncatula CU179634_3 I 0.754
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.754
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.754
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.754
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.754
MDP0000488395 Malus x domestica MDP0000488395 I 0.754
MDP0000548950 Malus x domestica MDP0000548950 I 0.754
ppa016222m Prunus persica ppa016222m I 0.754
ppa009716m Prunus persica ppa009716m I 0.754
ppa009964m Prunus persica ppa009964m I 0.754
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
30076.m004440 Ricinus communis 30076.m004440 I 0.739
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.739
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.739
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.739
PK14266.1 Cannabis sativa PK14266.1 I 0.739
MDP0000138486 Malus x domestica MDP0000138486 I 0.739
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.739
MDP0000284454 Malus x domestica MDP0000284454 I 0.739
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.725
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.725
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
ppa018603m Prunus persica ppa018603m I 0.725
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.725
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.725
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.710
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.710
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.710
MDP0000184420 Malus x domestica MDP0000184420 I 0.710
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.710