B9GUX4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s09830 T45457_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s09830.1 RRM 18 86

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.942
PK15672.1 Cannabis sativa PK15672.1 I 0.928
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.913
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.913
ppa019392m Prunus persica ppa019392m I 0.913
ppa018926m Prunus persica ppa018926m I 0.913
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.913
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.899
MDP0000134468 Malus x domestica MDP0000134468 I 0.899
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.899
29908.m006046 Ricinus communis 29908.m006046 I 0.899
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.884
MDP0000233609 Malus x domestica MDP0000233609 I 0.870
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.870
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.870
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.870
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.855
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.855
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.855
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.841
mgf017214m Mimulus guttatus mgf017214m I 0.841
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.826
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.826
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.826
PK21213.1 Cannabis sativa PK21213.1 I 0.826
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.812
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.812
MDP0000548950 Malus x domestica MDP0000548950 I 0.797
MDP0000488395 Malus x domestica MDP0000488395 I 0.797
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.797
ppa009964m Prunus persica ppa009964m I 0.797
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.797
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.797
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.797
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.797
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.797
MDP0000744398 Malus x domestica MDP0000744398 I 0.797
ppa009716m Prunus persica ppa009716m I 0.783
MDP0000138486 Malus x domestica MDP0000138486 I 0.783
30076.m004440 Ricinus communis 30076.m004440 I 0.783
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.783
ppa016222m Prunus persica ppa016222m I 0.783
CU179634_3 Medicago truncatula CU179634_3 I 0.783
PK14266.1 Cannabis sativa PK14266.1 I 0.783
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.783
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.768
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.768
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.768
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.768
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.768
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.768
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.754
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.754
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.754
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.754
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.754
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.754
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.754
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.754
MDP0000284454 Malus x domestica MDP0000284454 I 0.739
ppa018603m Prunus persica ppa018603m I 0.739
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.725
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.725
MDP0000184420 Malus x domestica MDP0000184420 I 0.725
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.725
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.725
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.710
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.710
PK29603.1 Cannabis sativa PK29603.1 I 0.710
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.710