Medtr3g076980 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g076980 T54468_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g076980.1 RRM 39 107
Medtr3g076980.1 RRM 139 208

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.950
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.942
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.936
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.935
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.928
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.928
PK25912.1 Cannabis sativa PK25912.1 N 0.921
ppa004834m Prunus persica ppa004834m N 0.914
ppa005122m Prunus persica ppa005122m N 0.914
MDP0000609551 Malus x domestica MDP0000609551 N 0.906
MDP0000188788 Malus x domestica MDP0000188788 N 0.906
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.906
MDP0000204698 Malus x domestica MDP0000204698 N 0.906
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.899
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.892
27613.m000635 Ricinus communis 27613.m000635 N 0.885
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.885
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.878
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.878
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.871
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.863
ppa005132m Prunus persica ppa005132m N 0.863
MDP0000320618 Malus x domestica MDP0000320618 N 0.863
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.863
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.863
30048.m000319 Ricinus communis 30048.m000319 N 0.863
ppa005119m Prunus persica ppa005119m N 0.856
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.856
MDP0000907782 Malus x domestica MDP0000907782 N 0.856
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.856
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.856
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.849
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.849
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.849
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.849
mgf012147m Mimulus guttatus mgf012147m N 0.849
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.849
MDP0000642684 Malus x domestica MDP0000642684 N 0.849
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.849
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.849
29608.m000212 Ricinus communis 29608.m000212 N 0.842
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.842
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.842
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.842
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.837
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.836
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.836
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.835
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.835
mgf009385m Mimulus guttatus mgf009385m N 0.835
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.835
PK13457.1 Cannabis sativa PK13457.1 N 0.827
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.827
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.820
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.799
mgf004139m Mimulus guttatus mgf004139m N 0.799
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
SB02G005670 Sorghum bicolor Sb02g005670 N 0.799
SB02G005620 Sorghum bicolor Sb02g005620 N 0.799
mgf009486m Mimulus guttatus mgf009486m N 0.793
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.791
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.784
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.784
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.784
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.777
SB02G037690 Sorghum bicolor Sb02g037690 N 0.777
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.777
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.770
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.770
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.770
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.763
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.719
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.719
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.712
SB05G025410 Sorghum bicolor Sb05g025410 N 0.712
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.712
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.712
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.705
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.705
ppa005309m Prunus persica ppa005309m N 0.705
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.705
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.705