MDP0000204698 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000204698 T57428_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000204698 RRM 8 76
MDP0000204698 RRM 107 176

Links

Other RRM family RBPs
Other Malus x domestica RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa004834m Prunus persica ppa004834m N 0.993
ppa005122m Prunus persica ppa005122m N 0.993
MDP0000188788 Malus x domestica MDP0000188788 N 0.993
MDP0000609551 Malus x domestica MDP0000609551 N 0.993
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.950
PK25912.1 Cannabis sativa PK25912.1 N 0.942
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.928
27613.m000635 Ricinus communis 27613.m000635 N 0.921
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.906
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.906
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.906
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.906
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.906
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.900
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.899
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.899
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.899
30048.m000319 Ricinus communis 30048.m000319 N 0.899
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.899
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.892
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.892
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.885
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.878
ppa005132m Prunus persica ppa005132m N 0.878
ppa005119m Prunus persica ppa005119m N 0.878
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.878
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.878
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.878
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.878
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.871
MDP0000320618 Malus x domestica MDP0000320618 N 0.871
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.871
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.871
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.871
mgf012147m Mimulus guttatus mgf012147m N 0.871
mgf009385m Mimulus guttatus mgf009385m N 0.871
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.871
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.864
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.863
29608.m000212 Ricinus communis 29608.m000212 N 0.863
MDP0000907782 Malus x domestica MDP0000907782 N 0.863
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.856
MDP0000642684 Malus x domestica MDP0000642684 N 0.856
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.851
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.849
PK13457.1 Cannabis sativa PK13457.1 N 0.849
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.849
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.849
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.842
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.835
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.835
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.835
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.827
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.827
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.813
mgf004139m Mimulus guttatus mgf004139m N 0.813
SB02G005620 Sorghum bicolor Sb02g005620 N 0.813
SB02G005670 Sorghum bicolor Sb02g005670 N 0.813
mgf009486m Mimulus guttatus mgf009486m N 0.807
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.806
SB02G037690 Sorghum bicolor Sb02g037690 N 0.806
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.806
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.806
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.799
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.799
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.791
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.791
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.791
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.791
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.777
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.777
SB05G025410 Sorghum bicolor Sb05g025410 N 0.741
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.727
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.719
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.719
ppa005309m Prunus persica ppa005309m N 0.705
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.705
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.705
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.705
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.705
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.705