MDP0000609551 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000609551 T57704_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000609551 RRM 8 76
MDP0000609551 RRM 107 176

Links

Other RRM family RBPs
Other Malus x domestica RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000188788 Malus x domestica MDP0000188788 N 1.000
MDP0000204698 Malus x domestica MDP0000204698 N 0.993
ppa005122m Prunus persica ppa005122m N 0.986
ppa004834m Prunus persica ppa004834m N 0.986
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.942
PK25912.1 Cannabis sativa PK25912.1 N 0.935
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.921
27613.m000635 Ricinus communis 27613.m000635 N 0.914
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.906
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.906
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.906
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.900
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.899
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.899
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.899
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.899
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.892
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.892
30048.m000319 Ricinus communis 30048.m000319 N 0.892
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.892
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.885
ppa005119m Prunus persica ppa005119m N 0.878
ppa005132m Prunus persica ppa005132m N 0.878
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.878
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.878
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.878
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.871
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.871
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.871
MDP0000320618 Malus x domestica MDP0000320618 N 0.871
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.871
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.871
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.871
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.871
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.864
MDP0000907782 Malus x domestica MDP0000907782 N 0.863
mgf009385m Mimulus guttatus mgf009385m N 0.863
mgf012147m Mimulus guttatus mgf012147m N 0.863
29608.m000212 Ricinus communis 29608.m000212 N 0.863
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.863
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.863
MDP0000642684 Malus x domestica MDP0000642684 N 0.856
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.856
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.851
PK13457.1 Cannabis sativa PK13457.1 N 0.849
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.849
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.842
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.842
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.842
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.835
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.835
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.827
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.827
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.820
mgf004139m Mimulus guttatus mgf004139m N 0.813
mgf009486m Mimulus guttatus mgf009486m N 0.807
SB02G005620 Sorghum bicolor Sb02g005620 N 0.806
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.806
SB02G005670 Sorghum bicolor Sb02g005670 N 0.806
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.799
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.799
SB02G037690 Sorghum bicolor Sb02g037690 N 0.799
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.791
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.791
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.791
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.791
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.784
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.784
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.777
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.770
SB05G025410 Sorghum bicolor Sb05g025410 N 0.741
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.727
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.712
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.712
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.705
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.705
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.705
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.705