MDP0000178517 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000178517 T06317_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000178517 CCCH ZF 152 177
MDP0000178517 CCCH ZF 206 223
MDP0000178517 CCCH ZF 244 270
MDP0000178517 CCCH ZF 405 431
MDP0000178517 CCCH ZF 451 477

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009030 Ricinus communis 30128.m009030 N 0.866
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.806
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.797
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.767
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.731
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.805
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.782
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.844
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.844
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.866
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.843
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.806
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.789
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.851
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.836
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.828
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.828
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.731
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.789
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.739
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.789
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.731
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.733
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.812
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.812
MDP0000577111 Malus x domestica MDP0000577111 N 0.791
MDP0000665604 Malus x domestica MDP0000665604 N 0.791
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.876
mgf007299m Mimulus guttatus mgf007299m N 0.807
PK23881.1 Cannabis sativa PK23881.1 N 0.858
ppa005813m Prunus persica ppa005813m N 0.873
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.739
SB05G013190 Sorghum bicolor Sb05g013190 N 0.797