CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
fubp1
(
Xenopus tropicalis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSXETG00000013137
T19764_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.755
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.755
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.755
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.755
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000028784
KH
90
152
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPDSVQAAKRLL
ENSXETP00000028784
KH
175
239
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIAGDPYKVQQAKEMV
ENSXETP00000028784
KH
265
327
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERIAQITGPQDRCQHAAEII
ENSXETP00000028784
KH
366
431
EFNFVVPTVKTGLIIGKGGETIKNISQQSGARIELQRNPPPNADPNVKLFTIRGSPQQIDYARQLV
ENSXETP00000047315
KH
90
152
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPDSVQAAKRLL
ENSXETP00000047315
KH
175
239
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIAGDPYKVQQAKEMV
ENSXETP00000047315
KH
265
327
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERIAQITGPQDRCQHAAEII
ENSXETP00000047315
KH
366
431
EFNFVVPTVKTGLIIGKGGETIKNISQQSGARIELQRNPPPNADPNVKLFTIRGSPQQIDYARQLV
Links
Other
KH
family RBPs
Other
Xenopus tropicalis
RBPs
109 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44277
Xenopus laevis
AAH44277
I
0.977
AAH60400
Xenopus laevis
AAH60400
N
0.775
AAH70981
Xenopus laevis
AAH70981
I
0.981
AAI61696
Xenopus laevis
AAI61696
I
0.743
AAI69815
Xenopus laevis
AAI69815
I
0.981
AAI69923
Xenopus laevis
AAI69923
I
0.735
AAN77160
Xenopus laevis
AAN77160
I
0.735
AAN77161
Xenopus laevis
AAN77161
I
0.953
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.771
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.938
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.755
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.942
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.759
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.942
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.767
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.755
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.755
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.767
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.942
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.938
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.942
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.755
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.775
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.942
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.755
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.775
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.756
KHSRP
Danio rerio
ENSDARG00000026489
I
0.724
fubp1
Danio rerio
ENSDARG00000029248
I
0.883
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.752
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.751
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.942
FUBP1
Equus caballus
ENSECAG00000010867
I
0.942
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.736
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.755
KHSRP
Felis catus
ENSFCAG00000003731
I
0.755
FUBP3
Felis catus
ENSFCAG00000005113
N
0.764
KHSRP
Homo sapiens
ENSG00000088247
D
0.755
FUBP3
Homo sapiens
ENSG00000107164
N
0.771
FUBP1
Homo sapiens
ENSG00000162613
I
0.946
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.728
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.884
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.729
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.704
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.771
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.931
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.755
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.771
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.946
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.755
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.942
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.767
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.712
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.771
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.930
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.739
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.798
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.775
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.733
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.942
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.946
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.755
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.771
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.700
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.760
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.755
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.764
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.938
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.775
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.942
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.884
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.942
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.841
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.767
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.751
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.875
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.717
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.704
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.744
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.748
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.942
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.946
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.755
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.771
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.946
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.755
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.771
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.775
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.755
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.778
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.767
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.942
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.942
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.755
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.755
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.934
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.767
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.916
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.748
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.717
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.875
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.744
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.721
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.934
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.942
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.755
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.942
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.775