PK13311.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK13311.1 T31688_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK13311.1 RRM 52 120
PK13311.1 RRM 140 210

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001425 Ricinus communis 29629.m001425 N 0.736
29917.m002004 Ricinus communis 29917.m002004 N 0.871
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.707
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.786
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.707
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.750
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.850
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.807
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.750
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.857
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.786
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.814
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.829
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.829
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.829
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.750
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.736
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.700
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.864
MDP0000191633 Malus x domestica MDP0000191633 N 0.729
MDP0000202850 Malus x domestica MDP0000202850 N 0.729
MDP0000220851 Malus x domestica MDP0000220851 N 0.721
MDP0000270712 Malus x domestica MDP0000270712 N 0.843
MDP0000303054 Malus x domestica MDP0000303054 N 0.843
MDP0000303178 Malus x domestica MDP0000303178 N 0.779
mgf016066m Mimulus guttatus mgf016066m N 0.779
PK22392.1 Cannabis sativa PK22392.1 N 0.729
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.871
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.736
ppa006963m Prunus persica ppa006963m N 0.721
ppa007179m Prunus persica ppa007179m N 0.900
ppa007812m Prunus persica ppa007812m N 0.714