ATPTB2 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G53180-TAIR-G T32843_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G53180.1-P RRM 20 78
AT5G53180.1-P RRM 124 181
AT5G53180.1-P RRM 249 311
AT5G53180.2-P RRM 31 81
AT5G53180.2-P RRM 149 211

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.771
30169.m006527 Ricinus communis 30169.m006527 I 0.922
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.774
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.714
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.750
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.751
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.761
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.894
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.778
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.906
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.906
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.777
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.922
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.781
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.777
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.961
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.922
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.928
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.757
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.906
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.928
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.766
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.771
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.769
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.778
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.922
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.777
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.757
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.755
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.780
MDP0000236223 Malus x domestica MDP0000236223 N 0.806
MDP0000269393 Malus x domestica MDP0000269393 I 0.894
MDP0000274672 Malus x domestica MDP0000274672 N 0.778
MDP0000796160 Malus x domestica MDP0000796160 I 0.741
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.906
Medtr7g010320 Medicago truncatula Medtr7g010320 N 0.772
mgf001230m Mimulus guttatus mgf001230m I 0.831
mgf005649m Mimulus guttatus mgf005649m I 0.874
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.793
PK14390.1 Cannabis sativa PK14390.1 I 0.746
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.767
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.735
ppa004961m Prunus persica ppa004961m I 0.757
ppa005791m Prunus persica ppa005791m I 0.933
SB01G034060 Sorghum bicolor Sb01g034060 I 0.730
SB03G028150 Sorghum bicolor Sb03g028150 I 0.770
SB07G021250 Sorghum bicolor Sb07g021250 I 0.769
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.773