CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSACAG00000010019
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000010019
T34675_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
sf3b4
M195_0.6
Danio rerio
CAAAAG
RNAcompete
Ray et al.(2013)
RNCMPT00224
1.000
Smp_067420
M201_0.6
Schistosoma mansoni
DWWUUUU
RNAcompete
Ray et al.(2013)
RNCMPT00232
0.875
sap-49
M261_0.6
Caenorhabditis elegans
CGUGUGAG
SELEX
Cook et al.(2011)
145_9163526
0.799
estExt_gwp_gw1.C_700168
M205_0.6
Physcomitrella patens
WUGGAG
RNAcompete
Ray et al.(2013)
RNCMPT00237
0.764
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000009831
RRM
15
85
VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIR
ENSACAP00000009831
RRM
102
173
IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
132 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29848.m004501
Ricinus communis
29848.m004501
N
0.000
EIF3B
Arabidopsis thaliana
AT5G27640-TAIR-G
N
0.000
BGIOSIBCE033128
Oryza indica
BGIOSIBCE033128
N
0.000
cassava18371.valid.m1
Manihot esculenta
cassava18371.valid.m1
N
0.000
cassava18372.valid.m1
Manihot esculenta
cassava18372.valid.m1
N
0.000
cassava8073.valid.m1
Manihot esculenta
cassava8073.valid.m1
N
0.000
chr1.CM0133.940.nd
Lotus japonicus
chr1.CM0133.940.nd
N
0.000
Cucsa.240830
Cucumis sativus
Cucsa.240830
N
0.000
XM_002872218.1
Arabidopsis lyrata
fgenesh2_kg.6__2697__AT5G25780.1
N
0.000
Glyma03g00470.1
Glycine max
Glyma03g00470.1
N
0.000
Glyma04g06080.1
Glycine max
Glyma04g06080.1
N
0.000
Glyma07g14870.1
Glycine max
Glyma07g14870.1
N
0.000
GSVIVG00036012001
Vitis vinifera
GSVIVG00036012001
N
0.000
LOC_Os10g41960
Oryza sativa
LOC_Os10g41960
N
0.000
MDP0000245995
Malus x domestica
MDP0000245995
N
0.000
MDP0000268597
Malus x domestica
MDP0000268597
N
0.000
Medtr3g138980
Medicago truncatula
Medtr3g138980
N
0.000
mgf009210m
Mimulus guttatus
mgf009210m
N
0.000
PDK_20s1307762g001
Phoenix dactylifera
PDK_20s1307762g001
N
0.000
PK08637.1
Cannabis sativa
PK08637.1
N
0.000
B9HB90_POPTR
Populus trichocarpa
POPTR_0006s28330
N
0.000
POPTR_0018s02940
Populus trichocarpa
POPTR_0018s02940
N
0.000
ppa002067m
Prunus persica
ppa002067m
N
0.000