ENSACAG00000010019 (Anolis carolinensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSACAG00000010019 T34675_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		1.000
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.875
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.799
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000009831 RRM 15 85
ENSACAP00000009831 RRM 102 173

Links

Other RRM family RBPs
Other Anolis carolinensis RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29848.m004501 Ricinus communis 29848.m004501 N 0.000
EIF3B Arabidopsis thaliana AT5G27640-TAIR-G N 0.000
BGIOSIBCE033128 Oryza indica BGIOSIBCE033128 N 0.000
cassava18371.valid.m1 Manihot esculenta cassava18371.valid.m1 N 0.000
cassava18372.valid.m1 Manihot esculenta cassava18372.valid.m1 N 0.000
cassava8073.valid.m1 Manihot esculenta cassava8073.valid.m1 N 0.000
chr1.CM0133.940.nd Lotus japonicus chr1.CM0133.940.nd N 0.000
Cucsa.240830 Cucumis sativus Cucsa.240830 N 0.000
XM_002872218.1 Arabidopsis lyrata fgenesh2_kg.6__2697__AT5G25780.1 N 0.000
Glyma03g00470.1 Glycine max Glyma03g00470.1 N 0.000
Glyma04g06080.1 Glycine max Glyma04g06080.1 N 0.000
Glyma07g14870.1 Glycine max Glyma07g14870.1 N 0.000
GSVIVG00036012001 Vitis vinifera GSVIVG00036012001 N 0.000
LOC_Os10g41960 Oryza sativa LOC_Os10g41960 N 0.000
MDP0000245995 Malus x domestica MDP0000245995 N 0.000
MDP0000268597 Malus x domestica MDP0000268597 N 0.000
Medtr3g138980 Medicago truncatula Medtr3g138980 N 0.000
mgf009210m Mimulus guttatus mgf009210m N 0.000
PDK_20s1307762g001 Phoenix dactylifera PDK_20s1307762g001 N 0.000
PK08637.1 Cannabis sativa PK08637.1 N 0.000
B9HB90_POPTR Populus trichocarpa POPTR_0006s28330 N 0.000
POPTR_0018s02940 Populus trichocarpa POPTR_0018s02940 N 0.000
ppa002067m Prunus persica ppa002067m N 0.000