LOC100069588 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000000642 T36555_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		1.000
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		1.000
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.759
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000000482 RRM 22 86
ENSECAP00000000482 RRM 96 163

Links

Other RRM family RBPs
Other Equus caballus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
18916_YNL110C Saccharomyces paradoxus 18916_YNL110C N 0.000
A7TR62_VANPO Vanderwaltozyma polyspora A7TR62_VANPO N 0.000
AFL224W Ashbya gossypii AFL224W N 0.000
CAGL0L03806g Candida glabrata CAGL0L03806g N 0.000
KLLA0F23650g Kluyveromyces lactis KLLA0F23650g N 0.000
KLTH0D09262g Kluyveromyces thermotolerans KLTH0D09262g N 0.000
Kwal_8458 Kluyveromyces waltii Kwal_8458 N 0.000
SAKL0E10604g Lachancea kluyveri SAKL0E10604g N 0.000
Scas_Contig666.11 Saccharomyces castellii Scas_Contig666.11 N 0.000
Skud_Contig1428.4 Saccharomyces kudriavzevii Skud_Contig1428.4 N 0.000
NOP15 Saccharomyces cerevisiae YNL110C N 0.000
ZYRO0B09790g Zygosaccharomyces rouxii ZYRO0B09790g N 0.000