SNRPB2 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000002735 T42015_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.775
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.761
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.761
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.761
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.761
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.761
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.761
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.761
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000005295 RRM 9 80
ENSTNIP00000005295 RRM 149 213

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
105398 Helobdella robusta 105398 I 0.701
186191 Helobdella robusta 186191 I 0.737
AAEL002980 Aedes aegypti AAEL002980 I 0.775
AAEL014167 Aedes aegypti AAEL014167 I 0.775
AAH44979 Xenopus laevis AAH44979 I 0.739
AAH72799 Xenopus laevis AAH72799 I 0.820
AAH84107 Xenopus laevis AAH84107 I 0.812
AGAP011637 Anopheles gambiae AGAP011637 I 0.768
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.763
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.761
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.835
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.768
CAA41021 Xenopus laevis CAA41021 I 0.739
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.768
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.768
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.739
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.813
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.761
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.761
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.835
SNRPA Canis familiaris ENSCAFG00000005091 I 0.761
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.835
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.739
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.835
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.746
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.783
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.825
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.835
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.761
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.715
snrpa Danio rerio ENSDARG00000018890 I 0.746
snrpb2 Danio rerio ENSDARG00000039424 I 0.912
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.761
LOC100068274 Equus caballus ENSECAG00000013141 I 0.761
LOC100050830 Equus caballus ENSECAG00000018407 I 0.835
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.746
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.790
SNRPA Echinops telfairi ENSETEG00000019205 I 0.725
SNRPA Felis catus ENSFCAG00000016209 I 0.761
SNRPA Homo sapiens ENSG00000077312 D 0.761
SNRPB2 Homo sapiens ENSG00000125870 I 0.835
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.745
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.905
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.835
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.761
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.835
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.835
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.748
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.835
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.835
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.761
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.827
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.835
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.761
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.813
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.761
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.835
Snrpa Mus musculus ENSMUSG00000061479 I 0.775
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.835
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.827
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.710
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.761
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.835
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.761
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.835
SNRPA Oryzias latipes ENSORLG00000006536 I 0.759
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.920
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.827
SNRPA Procavia capensis ENSPCAG00000012325 I 0.761
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.761
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.835
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.761
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.835
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.761
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.799
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.761
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.835
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.835
SNRPA Sus scrofa ENSSSCG00000002998 I 0.761
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.835
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.835
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.761
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.835
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.835
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.725
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.746
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.978
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.761
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.835
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.835
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.746
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.835
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.827
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.788
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.788
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.788
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.766
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.730
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.804
snf Drosophila melanogaster FBgn0003449 D 0.775
snf Drosophila mojavensis FBgn0069598 I 0.783
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.775
GF21334 Drosophila ananassae FBgn0098336 I 0.775
GG18748 Drosophila erecta FBgn0110957 I 0.775
GH24608 Drosophila grimshawi FBgn0132064 I 0.783
GL14287 Drosophila persimilis FBgn0151892 I 0.775
GM12396 Drosophila sechellia FBgn0167333 I 0.775
GJ16850 Drosophila virilis FBgn0204029 I 0.783
GK25839 Drosophila willistoni FBgn0227798 I 0.783
GE16390 Drosophila yakuba FBgn0233919 I 0.775
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.777
P45429 Xenopus laevis P45429 I 0.739
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.788