LOC_Os08g02330 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os08g02330 T45097_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g02330.1 RRM 119 186
LOC_Os08g02330.1 RRM 216 284

Links

Other RRM family RBPs
Other Oryza sativa RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29485.m000140 Ricinus communis 29485.m000140 N 0.861
29650.m000268 Ricinus communis 29650.m000268 N 0.774
30068.m002593 Ricinus communis 30068.m002593 N 0.920
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.752
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.861
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.745
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.759
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.781
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.854
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.708
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.745
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.730
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 1.000
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.752
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.781
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.752
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.956
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.788
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.854
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.854
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.854
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.854
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.854
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.854
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.854
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.905
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.745
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.766
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.708
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.732
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.854
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.912
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.912
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.701
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.861
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.766
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.781
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.861
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.869
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.861
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.883
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.869
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.796
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.788
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.715
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.752
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.949
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.745
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.715
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.964
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.847
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.796
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.905
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.905
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.883
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.883
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.715
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.788
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.745
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.745
MDP0000233630 Malus x domestica MDP0000233630 N 0.861
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.861
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.854
mgf005336m Mimulus guttatus mgf005336m N 0.723
mgf012896m Mimulus guttatus mgf012896m N 0.883
mgf013366m Mimulus guttatus mgf013366m N 0.847
mgf014445m Mimulus guttatus mgf014445m N 0.752
PDK_20s1559771g001 Phoenix dactylifera PDK_20s1559771g001 N 0.710
PDK_20s1621251g001 Phoenix dactylifera PDK_20s1621251g001 N 0.701
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.766
PK04894.1 Cannabis sativa PK04894.1 N 0.876
PK12463.1 Cannabis sativa PK12463.1 N 0.905
PK28889.1 Cannabis sativa PK28889.1 N 0.796
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.745
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.715
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.737
ppa006808m Prunus persica ppa006808m N 0.869
ppa009298m Prunus persica ppa009298m N 0.796
SB03G002180 Sorghum bicolor Sb03g002180 N 0.752
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.745
SB07G001560 Sorghum bicolor Sb07g001560 N 0.964
SB10G021290 Sorghum bicolor Sb10g021290 N 0.723