SF3B4 (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000001243 T40637_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		1.000
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.875
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.799
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000002107 RRM 15 85
ENSPTRP00000002107 RRM 102 173

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.000
LOC100070669 Equus caballus ENSECAG00000023932 N 0.000
SRSF6 Spermophilus tridecemlineatus ENSSTOG00000010866 N 0.000
SRSF4 Sorex araneus ENSSARG00000001277 N 0.000
XR_023431.1 Pan troglodytes ENSPTRG00000013506 N 0.000
SRSF6 Ochotona princeps ENSOPRG00000002017 N 0.000
SRSF6 Ornithorhynchus anatinus ENSOANG00000008955 N 0.000
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF6 Myotis lucifugus ENSMLUG00000016618 N 0.000
SRSF6 Meleagris gallopavo ENSMGAG00000000888 N 0.000
SRSF6 Loxodonta africana ENSLAFG00000006682 N 0.000
SRSF6 Tursiops truncatus ENSTTRG00000015410 N 0.000