CELF6 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000012391 T42329_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.871
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000031383 RRM 21 89
ENSTRUP00000031383 RRM 295 365
ENSTRUP00000031384 RRM 31 99
ENSTRUP00000031384 RRM 301 349
ENSTRUP00000031385 RRM 31 99
ENSTRUP00000031385 RRM 280 320
ENSTRUP00000031386 RRM 2 43
ENSTRUP00000031386 RRM 71 115
ENSTRUP00000031386 RRM 315 363

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRUNOL6 Homo sapiens ENSG00000140488 D 0.850
bru-3 Drosophila melanogaster FBgn0262350 D 0.871
Smp_131780 Schistosoma mansoni Smp_131780 I 0.764
GH14684 Drosophila grimshawi FBgn0122160 I 0.871
GG13757 Drosophila erecta FBgn0106020 I 0.871
GF10965 Drosophila ananassae FBgn0088005 I 0.871
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.864
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.836
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.864
CELF4 Tupaia belangeri ENSTBEG00000010647 I 0.899
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.750
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.907
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.850
CELF6 Oryzias latipes ENSORLG00000013392 I 0.986
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.850
GI13095 Drosophila mojavensis FBgn0135852 I 0.871
GL21647 Drosophila persimilis FBgn0159240 I 0.836
GM24582 Drosophila sechellia FBgn0179445 I 0.871
Smp_041280 Schistosoma mansoni Smp_041280 I 0.814
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.707
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.743
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.707
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.771
90208 Helobdella robusta 90208 I 0.759
62054 Helobdella robusta 62054 I 0.793
PHUM315130 Pediculus humanus PHUM315130 I 0.900
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.857
GE20053 Drosophila yakuba FBgn0237378 I 0.871
GK17101 Drosophila willistoni FBgn0219100 I 0.871
GJ13842 Drosophila virilis FBgn0201061 I 0.871
GD12651 Drosophila simulans FBgn0184378 I 0.871
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.829
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.907
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.714
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.979
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.864
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.907
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.714
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.850
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.864
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.857
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.714
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.879
CJA07020 Caenorhabditis japonica CJA07020 I 0.764
AGAP004950 Anopheles gambiae AGAP004950 I 0.871
AAEL014033 Aedes aegypti AAEL014033 I 0.864
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.857
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.857
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.943
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.921
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.858
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.950
Celf6 Mus musculus ENSMUSG00000032297 I 0.857
Celf4 Mus musculus ENSMUSG00000024268 I 0.892
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.879
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.907
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.921
LOAG_05508 Loa loa LOAG_05508 I 0.807
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.821
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.707
HEXA Macaca mulatta ENSMMUG00000010687 I 0.850
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.914
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.714
ENSCAFG00000017759 Canis familiaris ENSCAFG00000017759 N 0.788
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.721
CELF6 Tetraodon nigroviridis ENSTNIG00000005459 N 0.730
CELF4 Sus scrofa ENSSSCG00000003748 N 0.864
CELF4 Monodelphis domestica ENSMODG00000000306 N 0.873