CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRA2B
(
Tursiops truncatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTTRG00000008243
T42597_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000007804
RRM
156
226
LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
Links
Other
RRM
family RBPs
Other
Tursiops truncatus
RBPs
96 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa006577m
Prunus persica
ppa006577m
I
0.000
cassava37000.valid.m1
Manihot esculenta
cassava37000.valid.m1
I
0.000
cassava37001.valid.m1
Manihot esculenta
cassava37001.valid.m1
I
0.000
cassava37002.valid.m1
Manihot esculenta
cassava37002.valid.m1
I
0.000
cassava37003.valid.m1
Manihot esculenta
cassava37003.valid.m1
I
0.000
Cucsa.085910
Cucumis sativus
Cucsa.085910
I
0.000
fgenesh1_pm.C_scaffold_35000004
Selaginella moellendorfii
fgenesh1_pm.C_scaffold_35000004
I
0.000
Glyma13g27570.1
Glycine max
Glyma13g27570.1
I
0.000
Glyma15g11380.1
Glycine max
Glyma15g11380.1
I
0.000
Glyma17g01800.1
Glycine max
Glyma17g01800.1
I
0.000
mgf010468m
Mimulus guttatus
mgf010468m
I
0.000
cassava36999.valid.m1
Manihot esculenta
cassava36999.valid.m1
I
0.000
cassava35906.valid.m1
Manihot esculenta
cassava35906.valid.m1
I
0.000
LOC_Os03g07800
Oryza sativa
LOC_Os03g07800
I
0.000
29666.m001436
Ricinus communis
29666.m001436
I
0.000
XM_002867483.1
Arabidopsis lyrata
scaffold_701590.1
I
0.000
A9PGI8_POPTR
Populus trichocarpa
POPTR_0001s45000
I
0.000
MDP0000614064
Malus x domestica
MDP0000614064
N
0.000
MDP0000223369
Malus x domestica
MDP0000223369
N
0.000
mgf014417m
Mimulus guttatus
mgf014417m
N
0.000
ATRBP45C
Arabidopsis thaliana
AT4G27000-TAIR-G
N
0.000
XM_002889837.1
Arabidopsis lyrata
fgenesh2_kg.1__1255__AT1G11650.2
N
0.000
XM_002864318.1
Arabidopsis lyrata
fgenesh2_kg.8__1388__AT5G54900.1
N
0.000
29842.m003612
Ricinus communis
29842.m003612
N
0.000
LOC_Os03g37270
Oryza sativa
LOC_Os03g37270
N
0.000
B9H1C9_POPTR
Populus trichocarpa
POPTR_0004s01690
N
0.000
SB01G016170
Sorghum bicolor
Sb01g016170
N
0.000
ATRBP45B
Arabidopsis thaliana
AT1G11650-TAIR-G
N
0.000